Factsheet for Zm00001d022218_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	52.27	86.79
OQU90309	Sorghum	cytosol	91.48	82.99
EER99750	Sorghum	cytosol	89.77	81.44
Zm00001d006924_P001	Maize	plastid	88.64	80.83
Zm00001d047186_P001	Maize	extracellular, plasma membrane	86.36	78.76
GSMUA_Achr8P10060_001	Banana	cytosol	85.23	76.14
GSMUA_Achr2P06950_001	Banana	cytosol	85.23	76.14
GSMUA_Achr8P30200_001	Banana	cytosol	84.66	75.63
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	84.66	75.63
Zm00001d041760_P001	Maize	plasma membrane, plastid	82.95	75.26
GSMUA_Achr1P13080_001	Banana	plasma membrane	84.09	75.13
TraesCS2D01G164100.1	Wheat	golgi, unclear	82.95	74.87
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	82.95	74.87
KRH56926	Soybean	mitochondrion	82.95	74.11
KRH03454	Soybean	mitochondrion	82.95	74.11
AT5G39850.1	Thale cress	cytosol, mitochondrion	82.95	74.11
VIT_17s0000g05970.t01	Wine grape	cytosol	82.39	73.6
VIT_14s0108g00460.t01	Wine grape	cytosol	82.39	73.6
Solyc05g007250.2.1	Tomato	nucleus	82.39	73.6
Os07t0628400-00	Rice	cytosol	38.64	73.12
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	81.82	73.1
VIT_01s0026g02110.t01	Wine grape	cytosol	81.82	73.1
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	81.82	73.1
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	81.82	73.1
PGSC0003DMT400059349	Potato	cytosol	81.25	72.59
KRH54535	Soybean	cytosol	81.25	72.59
KRH63367	Soybean	nucleus	81.25	72.59
PGSC0003DMT400007431	Potato	cytosol	81.25	72.59
AT5G15200.1	Thale cress	cytosol	78.41	69.7
CDX78618	Canola	cytosol	77.27	69.04
CDX91003	Canola	cytosol	77.27	69.04
CDX70599	Canola	cytosol	77.27	69.04
CDX69542	Canola	cytosol	77.27	69.04
CDX85058	Canola	cytosol	77.27	69.04
Bra008713.1-P	Field mustard	cytosol	77.27	69.04
Bra006289.1-P	Field mustard	cytosol	77.27	69.04
CDX85559	Canola	extracellular	77.27	69.04
Bra023511.1-P	Field mustard	cytosol	75.0	67.01
Zm00001d029340_P003	Maize	cytosol	50.0	63.31
HORVU2Hr1G028510.1	Barley	cytosol	84.66	63.14
Zm00001d006923_P003	Maize	cytosol	67.61	48.97

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	UniProt:A0A1D6IKG2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	InterPro:IPR002942	InterPro:IPR036986
ProteinID:ONM59891.1	PFAM:PF00163	PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N
InterPro:Ribosomal_S4/S9_euk/arc	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018
UniParc:UPI0008435ACE	EnsemblPlantsGene:Zm00001d022218	EnsemblPlants:Zm00001d022218_P001	EnsemblPlants:Zm00001d022218_T001	SEG:seg	:

Description

40S ribosomal protein S9-2

Coordinates

chr7:-:172980430..172982341

Molecular Weight (calculated)

19854.2 Da

IEP (calculated)

10.536

GRAVY (calculated)

-0.511

Length

176 amino acids

Sequence
(BLAST)

001: MLAHMLSADK RLDAELKLVG EYGLRCKREL WRVQYALSRI RNAARELLTL DEKNPRRIFE GEALLRRMNR YGLLGEGQNK LDYVLALTVE NFLQRRLQTI
101: VFKNGMAKSI HHARVLIRVG RQPVNIPSFM VRVESEKHID FSLTSPLGGG PAGRVKRKNQ KASGGGGGGD GEEDDE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.