Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400007431 | Potato | cytosol | 99.49 | 99.49 |
| Solyc05g007250.2.1 | Tomato | nucleus | 98.48 | 98.48 |
| GSMUA_Achr8P10060_001 | Banana | cytosol | 93.91 | 93.91 |
| GSMUA_Achr2P06950_001 | Banana | cytosol | 93.91 | 93.91 |
| GSMUA_Achr1P13080_001 | Banana | plasma membrane | 93.91 | 93.91 |
| GSMUA_Achr11P... | Banana | cytosol, mitochondrion | 93.91 | 93.91 |
| GSMUA_Achr8P30200_001 | Banana | cytosol | 93.4 | 93.4 |
| KRH56926 | Soybean | mitochondrion | 92.89 | 92.89 |
| KRH03454 | Soybean | mitochondrion | 92.89 | 92.89 |
| VIT_01s0026g02110.t01 | Wine grape | cytosol | 91.37 | 91.37 |
| KRH63367 | Soybean | nucleus | 91.37 | 91.37 |
| KRH54535 | Soybean | cytosol | 91.37 | 91.37 |
| AT5G39850.1 | Thale cress | cytosol, mitochondrion | 88.83 | 88.83 |
| Zm00001d047186_P001 | Maize | extracellular, plasma membrane | 84.77 | 86.53 |
| AT5G15200.1 | Thale cress | cytosol | 86.8 | 86.36 |
| Os03t0154700-01 | Rice | mitochondrion | 84.77 | 85.64 |
| Os11t0602600-01 | Rice | nucleus | 84.77 | 85.64 |
| Zm00001d006924_P001 | Maize | plastid | 83.76 | 85.49 |
| CDX91003 | Canola | cytosol | 85.28 | 85.28 |
| CDX85559 | Canola | extracellular | 85.28 | 85.28 |
| CDX85058 | Canola | cytosol | 85.28 | 85.28 |
| CDX78618 | Canola | cytosol | 85.28 | 85.28 |
| CDX70599 | Canola | cytosol | 85.28 | 85.28 |
| CDX69542 | Canola | cytosol | 85.28 | 85.28 |
| Bra006289.1-P | Field mustard | cytosol | 85.28 | 85.28 |
| Bra008713.1-P | Field mustard | cytosol | 85.28 | 85.28 |
| Zm00001d041760_P001 | Maize | plasma membrane, plastid | 83.25 | 84.54 |
| EES15996 | Sorghum | cytosol | 83.25 | 84.1 |
| EER99750 | Sorghum | cytosol | 82.74 | 84.02 |
| OQU90309 | Sorghum | cytosol | 82.74 | 84.02 |
| Bra023511.1-P | Field mustard | cytosol | 83.25 | 83.25 |
| TraesCS5A01G104000.1 | Wheat | cytosol, mitochondrion | 82.23 | 83.08 |
| TraesCS5B01G112200.1 | Wheat | golgi, nucleus, unclear | 82.23 | 83.08 |
| TraesCS5D01G121600.1 | Wheat | cytosol, mitochondrion | 82.23 | 83.08 |
| HORVU5Hr1G038920.1 | Barley | plasma membrane | 82.23 | 83.08 |
| TraesCS2B01G183500.1 | Wheat | cytosol, mitochondrion | 80.71 | 81.54 |
| TraesCS2D01G164100.1 | Wheat | golgi, unclear | 80.71 | 81.54 |
| Zm00001d022218_P001 | Maize | plastid | 72.59 | 81.25 |
| Os11t0602500-00 | Rice | cytosol | 81.73 | 77.03 |
| Os03t0379500-01 | Rice | cytosol | 40.61 | 76.92 |
| OQU92521 | Sorghum | mitochondrion | 75.13 | 74.37 |
| Zm00001d029340_P003 | Maize | cytosol | 52.28 | 74.1 |
| Zm00001d022223_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole | 38.07 | 70.75 |
| HORVU2Hr1G028510.1 | Barley | cytosol | 81.22 | 67.8 |
| Os07t0628400-00 | Rice | cytosol | 29.95 | 63.44 |
| Zm00001d006923_P003 | Maize | cytosol | 69.54 | 56.38 |
Protein Annotations
| MapMan:17.1.3.1.10 | Gene3D:3.10.290.10 | ProteinID:ABA46767 | ProteinID:ABA46767.1 | EMBL:DQ200374 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | GO:GO:0019843 |
| GO:GO:0030529 | InterPro:IPR002942 | InterPro:IPR036986 | UniProt:M1C451 | PFAM:PF00163 | PFAM:PF01479 |
| EnsemblPlantsGene:PGSC0003DMG400023058 | PGSC:PGSC0003DMG400023058 | EnsemblPlants:PGSC0003DMT400059349 | ScanProsite:PS00632 | PFscan:PS50889 | PANTHER:PTHR11831 |
| PANTHER:PTHR11831:SF15 | InterPro:Ribosomal_S4/S9 | InterPro:Ribosomal_S4/S9_N | InterPro:Ribosomal_S4/S9_euk/arc | InterPro:Ribosomal_S4_CS | InterPro:S4_RNA-bd |
| InterPro:S4_RNA-bd_sf | SMART:SM00363 | SMART:SM01390 | SUPFAM:SSF55174 | TIGRFAMs:TIGR01018 | UniParc:UPI0002963B2C |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S9 [Source:PGSC_GENE;Acc:PGSC0003DMG400023058]
Coordinates
chr5:+:5518054..5520670
Molecular Weight (calculated)
23022.9 Da
IEP (calculated)
10.853
GRAVY (calculated)
-0.717
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARM LLTLDEKDSR RIFEGEALLR RMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTLVFKTGM AKSIHHARVL IRQRHIRVGR QVVNVASFMV RVDSQKHIDF SLTSPFGGGR PGRVKRKNQK SAAKKAAGGD GDEEDEE
101: LTVENFLERR LQTLVFKTGM AKSIHHARVL IRQRHIRVGR QVVNVASFMV RVDSQKHIDF SLTSPFGGGR PGRVKRKNQK SAAKKAAGGD GDEEDEE
001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
Arabidopsis Description
RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.