Factsheet for Os11t0602600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
nucleus: 19621931
plastid: 21433289
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0154700-01	Rice	mitochondrion	100.0	100.0
Os11t0602500-00	Rice	cytosol	95.9	89.47
GSMUA_Achr1P13080_001	Banana	plasma membrane	88.21	87.31
GSMUA_Achr2P06950_001	Banana	cytosol	88.21	87.31
GSMUA_Achr8P10060_001	Banana	cytosol	88.21	87.31
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	87.69	86.8
GSMUA_Achr8P30200_001	Banana	cytosol	87.69	86.8
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	86.67	85.79
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	86.67	85.79
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	86.67	85.79
KRH56926	Soybean	mitochondrion	86.67	85.79
KRH03454	Soybean	mitochondrion	86.67	85.79
VIT_17s0000g05970.t01	Wine grape	cytosol	86.15	85.28
VIT_14s0108g00460.t01	Wine grape	cytosol	86.15	85.28
Solyc05g007250.2.1	Tomato	nucleus	86.15	85.28
PGSC0003DMT400007431	Potato	cytosol	86.15	85.28
VIT_01s0026g02110.t01	Wine grape	cytosol	85.64	84.77
PGSC0003DMT400059349	Potato	cytosol	85.64	84.77
KRH54535	Soybean	cytosol	85.13	84.26
KRH63367	Soybean	nucleus	85.13	84.26
AT5G39850.1	Thale cress	cytosol, mitochondrion	83.59	82.74
AT5G15200.1	Thale cress	cytosol	80.51	79.29
Os03t0379500-01	Rice	cytosol	42.05	78.85
CDX78618	Canola	cytosol	79.49	78.68
CDX70599	Canola	cytosol	79.49	78.68
CDX69542	Canola	cytosol	79.49	78.68
Bra008713.1-P	Field mustard	cytosol	79.49	78.68
Bra006289.1-P	Field mustard	cytosol	79.49	78.68
CDX85058	Canola	cytosol	79.49	78.68
CDX85559	Canola	extracellular	79.49	78.68
CDX91003	Canola	cytosol	79.49	78.68
Bra023511.1-P	Field mustard	cytosol	77.44	76.65
Os07t0628400-00	Rice	cytosol	33.85	70.97

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	EntrezGene:4331662	EntrezGene:4350869	EntrezGene:9268088	ProteinID:ABA94599.1
ProteinID:ABA94601.1	ProteinID:ABF94048.1	ProteinID:ABG22548.1	EMBL:AK061350	EMBL:AK072671	EMBL:AK104111
EMBL:AK104265	EMBL:AK104660	EMBL:AK104761	ProteinID:BAF10918.1	ProteinID:BAF28596.1	ProteinID:BAS82355.1
ProteinID:BAT14767.1	ProteinID:EAZ18880.1	ProteinID:EEE52362.1	ProteinID:EEE58343.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843
GO:GO:0022627	GO:GO:0045903	InterPro:IPR002942	InterPro:IPR036986	EnsemblPlantsGene:Os11g0602600	EnsemblPlants:Os11t0602600-01
PFAM:PF00163	PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF16
UniProt:Q2R1J8	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd
InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	UniParc:UPI000068265E
RefSeq:XP_015616973.1	RefSeq:XP_015616975.1	RefSeq:XP_015630751.1	SEG:seg	:	:

Description

Similar to 40S ribosomal protein S9. (Os11t0602600-01)

Coordinates

chr11:+:23184448..23187520

Molecular Weight (calculated)

22674.6 Da

IEP (calculated)

10.899

GRAVY (calculated)

-0.710

Length

195 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNNARH LLTLDEKNPR RIFEGEALLR RMNRYGLLAD GQNKLDYVLA
101: LTVENFLARR LQTLVFKAGM AKSIHHARVL IRQRHIRVGR QIVNIPSFMV RVESEKHIDF SLTSPFGGGP PGRVKRKNQK KASGGGGDGE EEDEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.