Factsheet for Solyc04g005680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	100.0	100.0
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	100.0	100.0
Solyc05g007250.2.1	Tomato	nucleus	99.49	99.49
PGSC0003DMT400007431	Potato	cytosol	99.49	99.49
GSMUA_Achr8P10060_001	Banana	cytosol	94.92	94.92
GSMUA_Achr2P06950_001	Banana	cytosol	94.92	94.92
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	94.92	94.92
GSMUA_Achr1P13080_001	Banana	plasma membrane	94.92	94.92
GSMUA_Achr8P30200_001	Banana	cytosol	94.42	94.42
KRH03454	Soybean	mitochondrion	93.91	93.91
KRH56926	Soybean	mitochondrion	93.91	93.91
VIT_01s0026g02110.t01	Wine grape	cytosol	92.39	92.39
KRH63367	Soybean	nucleus	92.39	92.39
KRH54535	Soybean	cytosol	92.39	92.39
AT5G39850.1	Thale cress	cytosol, mitochondrion	89.34	89.34
AT5G15200.1	Thale cress	cytosol	87.31	86.87
Os03t0154700-01	Rice	mitochondrion	85.79	86.67
Os11t0602600-01	Rice	nucleus	85.79	86.67
Zm00001d047186_P001	Maize	extracellular, plasma membrane	84.77	86.53
CDX69542	Canola	cytosol	85.79	85.79
CDX70599	Canola	cytosol	85.79	85.79
CDX78618	Canola	cytosol	85.79	85.79
CDX91003	Canola	cytosol	85.79	85.79
CDX85058	Canola	cytosol	85.79	85.79
Bra008713.1-P	Field mustard	cytosol	85.79	85.79
CDX85559	Canola	extracellular	85.79	85.79
Bra006289.1-P	Field mustard	cytosol	85.79	85.79
Zm00001d006924_P001	Maize	plastid	83.76	85.49
EES15996	Sorghum	cytosol	84.26	85.13
OQU90309	Sorghum	cytosol	83.76	85.05
EER99750	Sorghum	cytosol	83.76	85.05
Zm00001d041760_P001	Maize	plasma membrane, plastid	83.25	84.54
Bra023511.1-P	Field mustard	cytosol	83.76	83.76
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	82.23	83.08
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	82.23	83.08
HORVU5Hr1G038920.1	Barley	plasma membrane	82.23	83.08
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	82.23	83.08
Zm00001d022218_P001	Maize	plastid	73.1	81.82
TraesCS2D01G164100.1	Wheat	golgi, unclear	80.71	81.54
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	80.71	81.54
Os03t0379500-01	Rice	cytosol	41.12	77.88
Os11t0602500-00	Rice	cytosol	82.23	77.51
Zm00001d029340_P003	Maize	cytosol	53.3	75.54
OQU92521	Sorghum	mitochondrion	76.14	75.38
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.07	70.75
HORVU2Hr1G028510.1	Barley	cytosol	81.22	67.8
Os07t0628400-00	Rice	cytosol	29.95	63.44
Zm00001d006923_P003	Maize	cytosol	69.54	56.38
Solyc03g077930.2.1	Tomato	cytosol	14.72	41.43

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529
GO:GO:0045903	InterPro:IPR002942	InterPro:IPR036986	UniProt:K4ATQ2	PFAM:PF00163	PFAM:PF01479
ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF15	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N
InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390
SUPFAM:SSF55174	EnsemblPlantsGene:Solyc04g005680.2	EnsemblPlants:Solyc04g005680.2.1	TIGRFAMs:TIGR01018	UniParc:UPI000044CF28	SEG:seg

Description

No Description!

Coordinates

chr4:-:447068..450082

Molecular Weight (calculated)

23005.9 Da

IEP (calculated)

10.853

GRAVY (calculated)

-0.707

Length

197 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARM LLTLDEKDPR RIFEGEALLR RMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTLVFKTGM AKSIHHARVL IRQRHIRVGR QVVNVASFMV RVDSQKHIDF SLTSPFGGGR PGRVKRKNQK SAAKKAAGGD GDEEDEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.