CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99750	Sorghum	cytosol	97.42	97.42
Zm00001d006924_P001	Maize	plastid	95.88	96.37
Zm00001d022218_P001	Maize	plastid	82.99	91.48
TraesCS2D01G164100.1	Wheat	golgi, unclear	90.72	90.26
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	90.72	90.26
EES15996	Sorghum	cytosol	89.69	89.23
GSMUA_Achr8P10060_001	Banana	cytosol	87.63	86.29
GSMUA_Achr2P06950_001	Banana	cytosol	87.63	86.29
GSMUA_Achr8P30200_001	Banana	cytosol	87.11	85.79
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	87.11	85.79
GSMUA_Achr1P13080_001	Banana	plasma membrane	86.6	85.28
KRH03454	Soybean	mitochondrion	85.57	84.26
KRH56926	Soybean	mitochondrion	85.57	84.26
Solyc05g007250.2.1	Tomato	nucleus	85.57	84.26
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	85.05	83.76
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	85.05	83.76
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	85.05	83.76
VIT_14s0108g00460.t01	Wine grape	cytosol	85.05	83.76
VIT_17s0000g05970.t01	Wine grape	cytosol	85.05	83.76
AT5G39850.1	Thale cress	cytosol, mitochondrion	85.05	83.76
PGSC0003DMT400007431	Potato	cytosol	84.54	83.25
VIT_01s0026g02110.t01	Wine grape	cytosol	84.54	83.25
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	45.36	83.02
KRH63367	Soybean	nucleus	84.02	82.74
PGSC0003DMT400059349	Potato	cytosol	84.02	82.74
KRH54535	Soybean	cytosol	84.02	82.74
OQU92521	Sorghum	mitochondrion	84.02	81.91
AT5G15200.1	Thale cress	cytosol	81.44	79.8
CDX85058	Canola	cytosol	80.41	79.19
Bra006289.1-P	Field mustard	cytosol	80.41	79.19
Bra008713.1-P	Field mustard	cytosol	80.41	79.19
CDX69542	Canola	cytosol	80.41	79.19
CDX70599	Canola	cytosol	80.41	79.19
CDX78618	Canola	cytosol	80.41	79.19
CDX85559	Canola	extracellular	80.41	79.19
CDX91003	Canola	cytosol	80.41	79.19
Bra023511.1-P	Field mustard	cytosol	78.35	77.16
HORVU2Hr1G028510.1	Barley	cytosol	92.27	75.85
Os07t0628400-00	Rice	cytosol	36.08	75.27

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	EntrezGene:8063507	UniProt:A0A1W0W7E0	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	InterPro:IPR002942
InterPro:IPR036986	EnsemblPlants:OQU90309	ProteinID:OQU90309	ProteinID:OQU90309.1	PFAM:PF00163	PFAM:PF01479
PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc
InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	EnsemblPlantsGene:SORBI_3002G384700	SUPFAM:SSF55174
TIGRFAMs:TIGR01018	UniParc:UPI0001A83F93	RefSeq:XP_002463225.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:73978981..73982089

Molecular Weight (calculated)

22578.4 Da

IEP (calculated)

10.816

GRAVY (calculated)

-0.729

Length

194 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLGE GQNKLDYVLA
101: LTVENFLQRR LQTIVFKNGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESEKHIDF SLTSPLGGGP AGRVKRKNQK KASGGGDDGE EDDE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.