Factsheet for GSMUA_Achr1P13080_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30200_001	Banana	cytosol	99.49	99.49
GSMUA_Achr8P10060_001	Banana	cytosol	98.98	98.98
GSMUA_Achr2P06950_001	Banana	cytosol	98.98	98.98
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	97.97	97.97
KRH03454	Soybean	mitochondrion	94.92	94.92
KRH56926	Soybean	mitochondrion	94.92	94.92
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	94.92	94.92
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	94.92	94.92
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	94.92	94.92
PGSC0003DMT400007431	Potato	cytosol	94.42	94.42
KRH54535	Soybean	cytosol	94.42	94.42
KRH63367	Soybean	nucleus	94.42	94.42
Solyc05g007250.2.1	Tomato	nucleus	94.42	94.42
PGSC0003DMT400059349	Potato	cytosol	93.91	93.91
VIT_14s0108g00460.t01	Wine grape	cytosol	93.91	93.91
VIT_17s0000g05970.t01	Wine grape	cytosol	93.91	93.91
VIT_01s0026g02110.t01	Wine grape	cytosol	92.39	92.39
AT5G39850.1	Thale cress	cytosol, mitochondrion	91.37	91.37
Os11t0602600-01	Rice	nucleus	87.31	88.21
Os03t0154700-01	Rice	mitochondrion	87.31	88.21
Zm00001d047186_P001	Maize	extracellular, plasma membrane	86.29	88.08
AT5G15200.1	Thale cress	cytosol	87.82	87.37
Zm00001d006924_P001	Maize	plastid	85.28	87.05
CDX69542	Canola	cytosol	86.8	86.8
Bra006289.1-P	Field mustard	cytosol	86.8	86.8
Bra008713.1-P	Field mustard	cytosol	86.8	86.8
CDX70599	Canola	cytosol	86.8	86.8
CDX78618	Canola	cytosol	86.8	86.8
CDX85058	Canola	cytosol	86.8	86.8
CDX85559	Canola	extracellular	86.8	86.8
CDX91003	Canola	cytosol	86.8	86.8
EER99750	Sorghum	cytosol	85.28	86.6
OQU90309	Sorghum	cytosol	85.28	86.6
EES15996	Sorghum	cytosol	84.77	85.64
Zm00001d041760_P001	Maize	plasma membrane, plastid	83.76	85.05
Bra023511.1-P	Field mustard	cytosol	84.77	84.77
Zm00001d022218_P001	Maize	plastid	75.13	84.09
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	82.74	83.59
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	82.74	83.59
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	82.74	83.59
HORVU5Hr1G038920.1	Barley	plasma membrane	82.74	83.59
TraesCS2D01G164100.1	Wheat	golgi, unclear	81.73	82.56
TraesCS2B01G183500.1	Wheat	cytosol, mitochondrion	81.73	82.56
Os03t0379500-01	Rice	cytosol	43.15	81.73
Os11t0602500-00	Rice	cytosol	83.76	78.95
Zm00001d029340_P003	Maize	cytosol	54.82	77.7
OQU92521	Sorghum	mitochondrion	77.67	76.88
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	39.09	72.64
HORVU2Hr1G028510.1	Barley	cytosol	81.73	68.22
Os07t0628400-00	Rice	cytosol	30.96	65.59
Zm00001d006923_P003	Maize	cytosol	70.05	56.79

Protein Annotations

MapMan:17.1.3.1.10	Gene3D:3.10.290.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr1G13080_001	EnsemblPlants:GSMUA_Achr1P13080_001
EnsemblPlants:GSMUA_Achr1T13080_001	InterPro:IPR002942	InterPro:IPR036986	UniProt:M0RZG6	PFAM:PF00163	PFAM:PF01479
ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF16	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N
InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390
SUPFAM:SSF55174	TIGRFAMs:TIGR01018	UniParc:UPI0002950CB9	SEG:seg	:	:

Description

40S ribosomal protein S9-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13080_001]

Coordinates

chr1:-:10003162..10006387

Molecular Weight (calculated)

22953.9 Da

IEP (calculated)

10.895

GRAVY (calculated)

-0.712

Length

197 amino acids

Sequence
(BLAST)

001: MVHVSFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARD LLTLDEKNPR RIFEGEALLR RMNRYGLLEE GQNKLDYVLA
101: LTVENFLERR LQTLVFKSGM AKSIHHARVL IRQRHIRVGR QVVNIPSFMV RVDSAKHIDF SLTSPFGGGR PGRVKRRNQK AAAKKAAGGD GDEEDEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.