Factsheet for Zm00001d047186_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006924_P001	Maize	plastid	96.37	96.37
Zm00001d029340_P003	Maize	cytosol	64.25	89.21
Zm00001d041760_P001	Maize	plasma membrane, plastid	89.64	89.18
Os03t0379500-01	Rice	cytosol	47.15	87.5
OQU92521	Sorghum	mitochondrion	89.12	86.43
Zm00001d022218_P001	Maize	plastid	78.76	86.36
GSMUA_Achr1P13080_001	Banana	plasma membrane	88.08	86.29
GSMUA_Achr2P06950_001	Banana	cytosol	88.08	86.29
GSMUA_Achr8P10060_001	Banana	cytosol	88.08	86.29
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	87.56	85.79
GSMUA_Achr8P30200_001	Banana	cytosol	87.56	85.79
KRH56926	Soybean	mitochondrion	86.53	84.77
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	86.53	84.77
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	86.53	84.77
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	86.53	84.77
PGSC0003DMT400059349	Potato	cytosol	86.53	84.77
KRH03454	Soybean	mitochondrion	86.53	84.77
VIT_17s0000g05970.t01	Wine grape	cytosol	86.01	84.26
VIT_14s0108g00460.t01	Wine grape	cytosol	86.01	84.26
Solyc05g007250.2.1	Tomato	nucleus	86.01	84.26
PGSC0003DMT400007431	Potato	cytosol	86.01	84.26
KRH54535	Soybean	cytosol	84.97	83.25
AT5G39850.1	Thale cress	cytosol, mitochondrion	84.97	83.25
KRH63367	Soybean	nucleus	84.97	83.25
VIT_01s0026g02110.t01	Wine grape	cytosol	84.46	82.74
AT5G15200.1	Thale cress	cytosol	82.9	80.81
CDX85058	Canola	cytosol	81.87	80.2
CDX78618	Canola	cytosol	81.87	80.2
CDX70599	Canola	cytosol	81.87	80.2
CDX69542	Canola	cytosol	81.87	80.2
CDX85559	Canola	extracellular	81.87	80.2
CDX91003	Canola	cytosol	81.87	80.2
Bra008713.1-P	Field mustard	cytosol	81.87	80.2
Bra006289.1-P	Field mustard	cytosol	81.87	80.2
Bra023511.1-P	Field mustard	cytosol	79.79	78.17
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	40.93	74.53
Zm00001d006923_P003	Maize	cytosol	72.54	57.61

Protein Annotations

EntrezGene:100192774	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	ProteinID:AQL05835.1	UniProt:B6SZS2	EMBL:EU958237
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0019843	InterPro:IPR002942	InterPro:IPR036986	PFAM:PF00163	PFAM:PF01479	PFscan:PS50889
PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:S4_RNA-bd
InterPro:S4_RNA-bd_sf	SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	UniParc:UPI000182CE24
EnsemblPlantsGene:Zm00001d047186	EnsemblPlants:Zm00001d047186_P001	EnsemblPlants:Zm00001d047186_T001	SEG:seg	:	:

Description

40S ribosomal protein S9

Coordinates

chr9:+:121314787..121317011

Molecular Weight (calculated)

22548.4 Da

IEP (calculated)

10.816

GRAVY (calculated)

-0.756

Length

193 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLGE GQNKLDYVLA
101: LTVENFLQRR LQTIVFKNGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVDSEKHIDF SLTSPLGGGE PGRVKRKNQK KASGGGGDDE EEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.