Factsheet for Zm00001d006923_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047186_P001	Maize	extracellular, plasma membrane	57.61	72.54
Zm00001d006924_P001	Maize	plastid	56.38	70.98
GSMUA_Achr8P30200_001	Banana	cytosol	57.2	70.56
GSMUA_Achr8P10060_001	Banana	cytosol	57.2	70.56
GSMUA_Achr2P06950_001	Banana	cytosol	57.2	70.56
AT5G39850.1	Thale cress	cytosol, mitochondrion	56.79	70.05
VIT_17s0000g05970.t01	Wine grape	cytosol	56.79	70.05
VIT_14s0108g00460.t01	Wine grape	cytosol	56.79	70.05
Solyc05g007250.2.1	Tomato	nucleus	56.79	70.05
GSMUA_Achr1P13080_001	Banana	plasma membrane	56.79	70.05
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	56.79	70.05
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	56.38	69.54
PGSC0003DMT400059349	Potato	cytosol	56.38	69.54
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	56.38	69.54
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	56.38	69.54
VIT_01s0026g02110.t01	Wine grape	cytosol	55.97	69.04
KRH03454	Soybean	mitochondrion	55.97	69.04
KRH54535	Soybean	cytosol	55.97	69.04
KRH56926	Soybean	mitochondrion	55.97	69.04
KRH63367	Soybean	nucleus	55.97	69.04
PGSC0003DMT400007431	Potato	cytosol	55.97	69.04
Zm00001d022218_P001	Maize	plastid	48.97	67.61
Zm00001d041760_P001	Maize	plasma membrane, plastid	53.5	67.01
AT5G15200.1	Thale cress	cytosol	53.5	65.66
CDX70599	Canola	cytosol	52.67	64.97
CDX69542	Canola	cytosol	52.67	64.97
CDX78618	Canola	cytosol	52.67	64.97
Bra008713.1-P	Field mustard	cytosol	52.67	64.97
Bra006289.1-P	Field mustard	cytosol	52.67	64.97
CDX85058	Canola	cytosol	52.67	64.97
CDX85559	Canola	extracellular	52.67	64.97
CDX91003	Canola	cytosol	52.67	64.97
Bra023511.1-P	Field mustard	cytosol	52.26	64.47
Zm00001d029340_P003	Maize	cytosol	30.86	53.96
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.93	43.4

Protein Annotations

EntrezGene:100283332	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	UniProt:A0A1D6F247	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0019843	InterPro:IPR002942	InterPro:IPR036986	ProteinID:ONM25506.1	PFAM:PF00163	PFAM:PF01479
PANTHER:PTHR11831	PANTHER:PTHR11831:SF21	InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:S4_RNA-bd
InterPro:S4_RNA-bd_sf	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	TMHMM:TMhelix	UniParc:UPI0002217C45
EnsemblPlantsGene:Zm00001d006923	EnsemblPlants:Zm00001d006923_P003	EnsemblPlants:Zm00001d006923_T003	:	:	:

Description

40S ribosomal protein S9-2

Coordinates

chr2:-:219457592..219459200

Molecular Weight (calculated)

28454.4 Da

IEP (calculated)

9.912

GRAVY (calculated)

0.051

Length

243 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLGE GQNKLDYVLA
101: LTVENFLQRR LQTIVFKNGM AKSIHHARVL IRQRHIRFVY MLLIPRLCIN VSCILKFSQR VKVCNCGSEQ FLCFLCVYVL CSFKFWHSLS ISYVSYEFSI
201: TVIVCAQFSL CFAAAGCMLV VKTHLTLDGP YDEKPCAILT TVV

Best Arabidopsis Sequence Match ( AT5G15200.2 )
(BLAST)

001: MVHVCYYRNY GKTFKGPRRP YEKERLDSEL KLVGEYGLRN KRELWRVQYS LSRIRNAARD LLTLDEKSPR RIFEGEALLR RMNRYGLLDE SQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHSRVL IRQRHIRYCI SSIYLCLCMN YLCYIN

Arabidopsis Description

RPS9B40S ribosomal protein S9-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.