Factsheet for Zm00001d041760_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15996	Sorghum	cytosol	97.94	97.44
TraesCS5D01G121600.1	Wheat	cytosol, mitochondrion	95.88	95.38
TraesCS5B01G112200.1	Wheat	golgi, nucleus, unclear	95.88	95.38
TraesCS5A01G104000.1	Wheat	cytosol, mitochondrion	95.88	95.38
HORVU5Hr1G038920.1	Barley	plasma membrane	95.88	95.38
Zm00001d006924_P001	Maize	plastid	90.72	91.19
Zm00001d047186_P001	Maize	extracellular, plasma membrane	89.18	89.64
GSMUA_Achr8P10060_001	Banana	cytosol	85.05	83.76
GSMUA_Achr2P06950_001	Banana	cytosol	85.05	83.76
GSMUA_Achr1P13080_001	Banana	plasma membrane	85.05	83.76
Solyc01g010540.2.1	Tomato	cytosol, mitochondrion	84.54	83.25
PGSC0003DMT400059349	Potato	cytosol	84.54	83.25
GSMUA_Achr8P30200_001	Banana	cytosol	84.54	83.25
GSMUA_Achr11P...	Banana	cytosol, mitochondrion	84.54	83.25
Solyc01g010580.2.1	Tomato	cytosol, mitochondrion	84.54	83.25
Solyc04g005680.2.1	Tomato	nucleus, plastid, unclear	84.54	83.25
Zm00001d022218_P001	Maize	plastid	75.26	82.95
Solyc05g007250.2.1	Tomato	nucleus	84.02	82.74
PGSC0003DMT400007431	Potato	cytosol	84.02	82.74
KRH56926	Soybean	mitochondrion	82.47	81.22
KRH03454	Soybean	mitochondrion	82.47	81.22
KRH63367	Soybean	nucleus	81.96	80.71
KRH54535	Soybean	cytosol	81.96	80.71
VIT_17s0000g05970.t01	Wine grape	cytosol	81.96	80.71
VIT_14s0108g00460.t01	Wine grape	cytosol	81.96	80.71
VIT_01s0026g02110.t01	Wine grape	cytosol	81.44	80.2
AT5G39850.1	Thale cress	cytosol, mitochondrion	80.93	79.7
Zm00001d029340_P003	Maize	cytosol	56.7	79.14
AT5G15200.1	Thale cress	cytosol	79.38	77.78
CDX78618	Canola	cytosol	78.35	77.16
CDX70599	Canola	cytosol	78.35	77.16
CDX69542	Canola	cytosol	78.35	77.16
CDX85058	Canola	cytosol	78.35	77.16
CDX85559	Canola	extracellular	78.35	77.16
CDX91003	Canola	cytosol	78.35	77.16
Bra008713.1-P	Field mustard	cytosol	78.35	77.16
Bra006289.1-P	Field mustard	cytosol	78.35	77.16
Bra023511.1-P	Field mustard	cytosol	76.8	75.63
Zm00001d022223_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	38.66	70.75
Zm00001d006923_P003	Maize	cytosol	67.01	53.5

Protein Annotations

EntrezGene:100282862	MapMan:17.1.3.1.10	Gene3D:3.10.290.10	UniProt:B6T7B2	EMBL:BT054326	EMBL:EU960877
EMBL:EU962571	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR036986	ProteinID:ONM33621.1
PFAM:PF00163	PFAM:PF01479	ScanProsite:PS00632	PFscan:PS50889	PANTHER:PTHR11831	PANTHER:PTHR11831:SF15
InterPro:Ribosomal_S4/S9	InterPro:Ribosomal_S4/S9_N	InterPro:Ribosomal_S4/S9_euk/arc	InterPro:Ribosomal_S4_CS	InterPro:S4_RNA-bd	InterPro:S4_RNA-bd_sf
SMART:SM00363	SMART:SM01390	SUPFAM:SSF55174	TIGRFAMs:TIGR01018	UniParc:UPI000182C4C8	EnsemblPlantsGene:Zm00001d041760
EnsemblPlants:Zm00001d041760_P001	EnsemblPlants:Zm00001d041760_T001	SEG:seg	:	:	:

Description

40S ribosomal protein S9-2

Coordinates

chr3:-:136288386..136290732

Molecular Weight (calculated)

22433.3 Da

IEP (calculated)

10.938

GRAVY (calculated)

-0.664

Length

194 amino acids

Sequence
(BLAST)

001: MVHVNFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYA LSRIRNAARH LLTLDEKNPR RIFEGEALLR RMNRYGLLAE GQNKLDYVLA
101: LTAENFLARR LQTLVFKAGM AKSIHHARVL IKQRHIRVGR QIVNVPSFMV RVESEKHIDF SLSSPFGGGP AGRVKRKNQK KASGGGDAGD EDEE

Best Arabidopsis Sequence Match ( AT5G39850.1 )
(BLAST)

001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE

Arabidopsis Description

RPS9C40S ribosomal protein S9-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.