CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32478	Canola	cytosol	99.54	99.54
Bra032586.1-P	Field mustard	cytosol, mitochondrion	92.63	99.5
CDY15263	Canola	cytosol	98.62	98.62
CDX89944	Canola	cytosol	98.62	98.17
CDY65792	Canola	cytosol	95.85	96.74
CDY15438	Canola	cytosol	95.39	95.83
CDY52784	Canola	cytosol	86.64	94.47
CDY22039	Canola	cytosol	86.64	94.0
CDY18029	Canola	cytosol	75.58	93.18
CDX90946	Canola	cytosol	83.41	92.35
AT1G02780.1	Thale cress	cytosol	87.56	88.78
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	83.41	87.02
KRH68137	Soybean	nucleus	84.33	86.32
VIT_05s0077g01840.t01	Wine grape	cytosol	81.57	85.92
KRH68219	Soybean	nucleus	83.87	85.85
KRG96400	Soybean	nucleus	83.87	85.85
KRG96473	Soybean	nucleus	83.87	85.85
KRH31849	Soybean	nucleus	83.87	85.85
KRH69269	Soybean	nucleus	83.41	85.38
KRH69268	Soybean	nucleus	82.49	84.43
KRH31847	Soybean	nucleus	82.49	84.43
Os03t0337800-01	Rice	nucleus	80.18	83.65
TraesCS2A01G108900.1	Wheat	cytosol	80.18	83.25
TraesCS2D01G109000.1	Wheat	golgi	80.18	83.25
EES06302	Sorghum	cytosol, mitochondrion	79.26	83.09
HORVU4Hr1G049670.2	Barley	cytosol	77.88	82.84
HORVU2Hr1G018700.1	Barley	plasma membrane	79.72	82.78
PGSC0003DMT400046201	Potato	mitochondrion	81.57	82.71
Os03t0579300-00	Rice	nucleus	77.88	82.04
TraesCS2A01G094200.1	Wheat	cytosol	79.72	81.99
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	82.95	81.82
EER89359	Sorghum	cytosol, mitochondrion	78.34	81.73
TraesCS2D01G092800.1	Wheat	nucleus	80.18	81.69
EES03157	Sorghum	cytosol, mitochondrion	77.88	81.64
TraesCS4D01G170100.1	Wheat	cytosol	79.26	75.44
CDY01919	Canola	endoplasmic reticulum	65.9	73.71
CDX92095	Canola	cytosol, plastid	49.77	67.08
Solyc09g031760.1.1	Tomato	cytosol	36.87	66.67
TraesCS4A01G137200.1	Wheat	cytosol	64.98	62.39
CDY28336	Canola	cytosol, plastid	17.05	54.41
KRH76216	Soybean	cytosol, mitochondrion	76.04	48.53
CDX95905	Canola	nucleus	58.53	46.35

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078HI92	UniProt:A0A078HI92
EnsemblPlants:CDY37461	ProteinID:CDY37461	ProteinID:CDY37461.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00064044001	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0004EE3B85	SEG:seg	:

Description

BnaC08g45990DRibosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:A0A078HI92]

Coordinates

chrLK032400:+:222465..223819

Molecular Weight (calculated)

24987.0 Da

IEP (calculated)

11.918

GRAVY (calculated)

-1.024

Length

217 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESQ DISMANSRQN IRKLVNDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PATAPPAAAA
201: ATTTAQTAEV PKKKSKK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.