CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69269	Soybean	nucleus	97.17	97.17
KRH68219	Soybean	nucleus	91.04	91.04
KRH68137	Soybean	nucleus	90.57	90.57
KRH31847	Soybean	nucleus	90.09	90.09
KRG96400	Soybean	nucleus	90.09	90.09
CDY52784	Canola	cytosol	84.43	89.95
PGSC0003DMT400046201	Potato	mitochondrion	90.57	89.72
KRG96473	Soybean	nucleus	89.62	89.62
Bra036285.1-P	Field mustard	cytosol	83.96	89.45
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	89.62	89.2
KRH69268	Soybean	nucleus	89.15	89.15
CDY22039	Canola	cytosol	83.96	89.0
Bra000887.1-P	Field mustard	cytosol	79.25	88.89
CDX90946	Canola	cytosol	82.08	88.78
CDY18029	Canola	cytosol	73.58	88.64
Solyc09g075430.2.1	Tomato	nucleus, unclear	90.57	88.07
Os03t0337800-01	Rice	nucleus	86.32	87.98
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	90.57	87.27
HORVU4Hr1G049670.2	Barley	cytosol	83.96	87.25
Os03t0579300-00	Rice	nucleus	84.43	86.89
TraesCS2A01G108900.1	Wheat	cytosol	85.38	86.6
TraesCS2D01G109000.1	Wheat	golgi	85.38	86.6
EES03157	Sorghum	cytosol, mitochondrion	84.43	86.47
EES06302	Sorghum	cytosol, mitochondrion	84.43	86.47
HORVU2Hr1G018700.1	Barley	plasma membrane	84.43	85.65
CDY65792	Canola	cytosol	86.79	85.58
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.96	85.58
CDY15438	Canola	cytosol	86.79	85.19
EER89359	Sorghum	cytosol, mitochondrion	83.49	85.1
TraesCS2A01G094200.1	Wheat	cytosol	83.96	84.36
CDY32478	Canola	cytosol	86.32	84.33
AT1G02780.1	Thale cress	cytosol	84.91	84.11
TraesCS2D01G092800.1	Wheat	nucleus	84.43	84.04
Bra030509.1-P	Field mustard	cytosol	86.32	83.94
CDX89944	Canola	cytosol	86.32	83.94
CDY37461	Canola	cytosol	85.85	83.87
Bra032586.1-P	Field mustard	cytosol, mitochondrion	79.72	83.66
CDY15263	Canola	cytosol	85.38	83.41
AT3G16780.1	Thale cress	cytosol	82.08	83.25
Bra033346.1-P	Field mustard	cytosol	64.15	80.47
TraesCS4D01G170100.1	Wheat	cytosol	84.91	78.95
GSMUA_Achr1P26610_001	Banana	cytosol	70.75	78.53
Solyc09g031760.1.1	Tomato	cytosol	40.57	71.67
CDY01919	Canola	endoplasmic reticulum	64.15	70.1
CDX92095	Canola	cytosol, plastid	52.36	68.94
Bra022177.1-P	Field mustard	cytosol	65.57	66.83
TraesCS4A01G137200.1	Wheat	cytosol	70.28	65.93
Zm00001d053864_P001	Maize	cytosol	69.81	64.91
CDY28336	Canola	cytosol, plastid	18.87	58.82
KRH76216	Soybean	cytosol, mitochondrion	83.96	52.35
CDX95905	Canola	nucleus	57.55	44.53
TraesCS2B01G419700.1	Wheat	plastid	36.32	44.25

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100499920	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:ACUP02006088
EMBL:BT090112	UniProt:C6SY65	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G016400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	EnsemblPlants:KRH31849	ProteinID:KRH31849	ProteinID:KRH31849.1	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001B1568D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:1471429..1474823

Molecular Weight (calculated)

24781.7 Da

IEP (calculated)

12.091

GRAVY (calculated)

-1.194

Length

212 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKNARREER LAQGPGERPP AAQTATPATA
201: SQPPRASKKS KK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.