CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31849	Soybean	nucleus	97.17	97.17
KRH68219	Soybean	nucleus	90.09	90.09
KRH31847	Soybean	nucleus	89.62	89.62
CDY52784	Canola	cytosol	83.96	89.45
Bra000887.1-P	Field mustard	cytosol	79.72	89.42
CDX90946	Canola	cytosol	82.55	89.29
CDY18029	Canola	cytosol	74.06	89.2
KRG96400	Soybean	nucleus	89.15	89.15
KRG96473	Soybean	nucleus	89.15	89.15
KRH68137	Soybean	nucleus	89.15	89.15
Bra036285.1-P	Field mustard	cytosol	83.49	88.94
PGSC0003DMT400046201	Potato	mitochondrion	89.62	88.78
KRH69268	Soybean	nucleus	88.68	88.68
CDY22039	Canola	cytosol	83.49	88.5
Solyc09g075430.2.1	Tomato	nucleus, unclear	90.09	87.61
Os03t0337800-01	Rice	nucleus	85.85	87.5
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	87.74	87.32
HORVU4Hr1G049670.2	Barley	cytosol	83.96	87.25
Os03t0579300-00	Rice	nucleus	84.43	86.89
TraesCS2A01G108900.1	Wheat	cytosol	85.38	86.6
TraesCS2D01G109000.1	Wheat	golgi	85.38	86.6
EES03157	Sorghum	cytosol, mitochondrion	84.43	86.47
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	89.62	86.36
CDY65792	Canola	cytosol	87.26	86.05
EES06302	Sorghum	cytosol, mitochondrion	83.96	85.99
HORVU2Hr1G018700.1	Barley	plasma membrane	84.43	85.65
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.49	85.1
EER89359	Sorghum	cytosol, mitochondrion	83.49	85.1
CDY15438	Canola	cytosol	86.32	84.72
AT1G02780.1	Thale cress	cytosol	85.38	84.58
TraesCS2A01G094200.1	Wheat	cytosol	83.96	84.36
TraesCS2D01G092800.1	Wheat	nucleus	84.43	84.04
CDY32478	Canola	cytosol	85.85	83.87
AT3G16780.1	Thale cress	cytosol	82.55	83.73
CDX89944	Canola	cytosol	85.85	83.49
Bra030509.1-P	Field mustard	cytosol	85.85	83.49
CDY37461	Canola	cytosol	85.38	83.41
Bra032586.1-P	Field mustard	cytosol, mitochondrion	79.25	83.17
CDY15263	Canola	cytosol	84.91	82.95
Bra033346.1-P	Field mustard	cytosol	63.68	79.88
TraesCS4D01G170100.1	Wheat	cytosol	84.43	78.51
GSMUA_Achr1P26610_001	Banana	cytosol	70.28	78.01
Solyc09g031760.1.1	Tomato	cytosol	40.57	71.67
CDY01919	Canola	endoplasmic reticulum	63.68	69.59
CDX92095	Canola	cytosol, plastid	51.89	68.32
Bra022177.1-P	Field mustard	cytosol	66.04	67.31
TraesCS4A01G137200.1	Wheat	cytosol	70.28	65.93
Zm00001d053864_P001	Maize	cytosol	68.87	64.04
CDY28336	Canola	cytosol, plastid	18.87	58.82
KRH76216	Soybean	cytosol, mitochondrion	83.96	52.35
CDX95905	Canola	nucleus	58.02	44.89
TraesCS2B01G419700.1	Wheat	plastid	35.85	43.68

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100818880	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:ACUP02000698
EMBL:BT098932	UniProt:C6TMH8	ncoils:Coil	EnsemblPlantsGene:GLYMA_02G016000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	EnsemblPlants:KRH69269	ProteinID:KRH69269	ProteinID:KRH69269.1	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001B17253	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:1438753..1440664

Molecular Weight (calculated)

24745.7 Da

IEP (calculated)

12.009

GRAVY (calculated)

-1.157

Length

212 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKNARREER LAQGPGERPS AAQTTTPATA
201: SQPAQALKKS KK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.