CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31847	Soybean	nucleus	98.11	98.11
KRG96473	Soybean	nucleus	97.17	97.17
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	91.04	92.79
KRH68219	Soybean	nucleus	91.51	91.51
KRG96400	Soybean	nucleus	89.15	89.15
KRH31849	Soybean	nucleus	89.15	89.15
KRH69269	Soybean	nucleus	88.68	88.68
Os03t0337800-01	Rice	nucleus	86.32	87.98
Bra000887.1-P	Field mustard	cytosol	78.3	87.83
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	88.21	87.79
CDX90946	Canola	cytosol	81.13	87.76
HORVU4Hr1G049670.2	Barley	cytosol	84.43	87.75
KRH68137	Soybean	nucleus	87.74	87.74
CDY18029	Canola	cytosol	72.64	87.5
HORVU2Hr1G018700.1	Barley	plasma membrane	85.85	87.08
EER89359	Sorghum	cytosol, mitochondrion	85.38	87.02
Bra036285.1-P	Field mustard	cytosol	81.6	86.93
CDY52784	Canola	cytosol	81.6	86.93
Solyc09g075430.2.1	Tomato	nucleus, unclear	89.15	86.7
CDY22039	Canola	cytosol	81.6	86.5
EES03157	Sorghum	cytosol, mitochondrion	84.43	86.47
EES06302	Sorghum	cytosol, mitochondrion	84.43	86.47
Os03t0579300-00	Rice	nucleus	83.96	86.41
TraesCS2A01G108900.1	Wheat	cytosol	84.43	85.65
TraesCS2D01G109000.1	Wheat	golgi	84.43	85.65
TraesCS2A01G094200.1	Wheat	cytosol	84.91	85.31
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	88.21	85.0
TraesCS2D01G092800.1	Wheat	nucleus	85.38	84.98
AT1G02780.1	Thale cress	cytosol	85.38	84.58
PGSC0003DMT400046201	Potato	mitochondrion	85.38	84.58
AT4G02230.1	Thale cress	cytosol, mitochondrion	82.55	84.13
CDY65792	Canola	cytosol	84.43	83.26
AT3G16780.1	Thale cress	cytosol	82.08	83.25
CDY32478	Canola	cytosol	84.91	82.95
CDX89944	Canola	cytosol	84.91	82.57
CDY15263	Canola	cytosol	84.43	82.49
CDY37461	Canola	cytosol	84.43	82.49
Bra032586.1-P	Field mustard	cytosol, mitochondrion	78.3	82.18
Bra030509.1-P	Field mustard	cytosol	84.43	82.11
CDY15438	Canola	cytosol	82.55	81.02
TraesCS4D01G170100.1	Wheat	cytosol	84.91	78.95
Bra033346.1-P	Field mustard	cytosol	62.74	78.7
GSMUA_Achr1P26610_001	Banana	cytosol	70.75	78.53
Solyc09g031760.1.1	Tomato	cytosol	41.04	72.5
CDX92095	Canola	cytosol, plastid	51.42	67.7
CDY01919	Canola	endoplasmic reticulum	61.32	67.01
Bra022177.1-P	Field mustard	cytosol	64.62	65.87
TraesCS4A01G137200.1	Wheat	cytosol	69.81	65.49
Zm00001d053864_P001	Maize	cytosol	68.4	63.6
CDY28336	Canola	cytosol, plastid	18.87	58.82
KRH76216	Soybean	cytosol, mitochondrion	80.66	50.29
TraesCS2B01G419700.1	Wheat	plastid	36.32	44.25
CDX95905	Canola	nucleus	56.6	43.8

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100816734	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:ACUP02000698
EnsemblPlantsGene:GLYMA_02G015900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR015972	UniProt:K7K5X7	EnsemblPlants:KRH69268
ProteinID:KRH69268	ProteinID:KRH69268.1	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI0002336F25	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:1434150..1436232

Molecular Weight (calculated)

24598.5 Da

IEP (calculated)

12.009

GRAVY (calculated)

-1.075

Length

212 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRLN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKIARREER LAQGPGEKPS AAPSAPSATA
201: SQPAQASKKS KK

Best Arabidopsis Sequence Match ( AT4G16030.1 )
(BLAST)

001: MVSIHFHSRS RARRKCRHTG YGKDTMEALR RIMKRLTRRL KMLKRLLKKF CWNKKIDKLV YYHDMFMKVK GKVYKNKCVL MESMHKSSRE RKFSGSEMRL
101: ALEPEGEKTA SAPQ

Arabidopsis Description

Probable ribosomal protein [Source:UniProtKB/TrEMBL;Acc:Q680Q9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.