Factsheet for Os03t0337800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 4
cytosol 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G049670.2	Barley	cytosol	94.71	96.57
Os03t0579300-00	Rice	nucleus	94.71	95.63
EER89359	Sorghum	cytosol, mitochondrion	94.23	94.23
Zm00001d045069_P001	Maize	plasma membrane, plastid	94.23	94.23
Zm00001d044287_P001	Maize	plasma membrane, plastid	93.27	93.72
EES03157	Sorghum	cytosol, mitochondrion	93.27	93.72
EES06302	Sorghum	cytosol, mitochondrion	92.31	92.75
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	90.38	91.71
GSMUA_Achr3P00710_001	Banana	plasma membrane	87.98	89.27
GSMUA_Achr9P20320_001	Banana	cytosol	86.06	89.05
VIT_05s0077g01840.t01	Wine grape	cytosol	87.98	88.83
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	86.54	88.67
KRH68137	Soybean	nucleus	88.94	87.26
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	87.02	87.02
KRG96473	Soybean	nucleus	88.46	86.79
KRH68219	Soybean	nucleus	88.46	86.79
KRH31847	Soybean	nucleus	87.98	86.32
KRH69268	Soybean	nucleus	87.98	86.32
KRH31849	Soybean	nucleus	87.98	86.32
KRG96400	Soybean	nucleus	87.98	86.32
Zm00001d015300_P002	Maize	cytosol, mitochondrion	90.87	85.91
KRH69269	Soybean	nucleus	87.5	85.85
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	87.5	85.45
Bra036285.1-P	Field mustard	cytosol	81.73	85.43
CDY52784	Canola	cytosol	81.73	85.43
CDY22039	Canola	cytosol	81.73	85.0
CDY18029	Canola	cytosol	71.63	84.66
CDX90946	Canola	cytosol	79.33	84.18
Bra000887.1-P	Field mustard	cytosol	76.44	84.13
AT4G02230.1	Thale cress	cytosol, mitochondrion	82.69	82.69
AT1G02780.1	Thale cress	cytosol	84.13	81.78
Solyc09g075430.2.1	Tomato	nucleus, unclear	85.58	81.65
PGSC0003DMT400046201	Potato	mitochondrion	83.65	81.31
CDY65792	Canola	cytosol	83.65	80.93
CDY32478	Canola	cytosol	84.13	80.65
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	85.1	80.45
CDY37461	Canola	cytosol	83.65	80.18
CDY15438	Canola	cytosol	83.17	80.09
AT3G16780.1	Thale cress	cytosol	80.29	79.9
CDX89944	Canola	cytosol	83.65	79.82
Bra030509.1-P	Field mustard	cytosol	83.65	79.82
CDY15263	Canola	cytosol	83.17	79.72
Bra032586.1-P	Field mustard	cytosol, mitochondrion	77.4	79.7
GSMUA_Achr1P26610_001	Banana	cytosol	73.08	79.58
Bra033346.1-P	Field mustard	cytosol	62.98	77.51
GSMUA_Achr1P24740_001	Banana	cytosol	54.33	72.44
VIT_17s0000g02150.t01	Wine grape	cytosol	59.62	67.76
Solyc09g031760.1.1	Tomato	cytosol	37.98	65.83
CDY01919	Canola	endoplasmic reticulum	61.06	65.46
CDX92095	Canola	cytosol, plastid	49.52	63.98
Bra022177.1-P	Field mustard	cytosol	62.98	62.98
CDY28336	Canola	cytosol, plastid	18.75	57.35
AT4G16030.1	Thale cress	cytosol, mitochondrion	29.33	53.51
KRH76216	Soybean	cytosol, mitochondrion	79.81	48.82
CDX95905	Canola	nucleus	55.29	41.97

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	EntrezGene:4332773	InterPro:60S_ribosomal_L19/L19e_sf	ProteinID:ABF95832.1
EMBL:AK059309	EMBL:AK102721	ProteinID:BAF11965.1	ProteinID:BAS84098.1	ProteinID:EAZ26849.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR015972	HAMAP:MF_01475	EnsemblPlantsGene:Os03g0337800	EnsemblPlants:Os03t0337800-01	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	UniProt:Q10LR6	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0000DB422C	RefSeq:XP_015632604.1	SEG:seg

Description

Similar to 60S ribosomal protein L19 (Fragment). (Os03t0337800-01)

Coordinates

chr3:-:12542185..12544690

Molecular Weight (calculated)

24143.0 Da

IEP (calculated)

11.959

GRAVY (calculated)

-1.058

Length

208 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IKKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPREPAA PAAAAPAQTA
201: AAPKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.