CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000887.1-P	Field mustard	cytosol	96.43	100.0
CDY18029	Canola	cytosol	88.27	98.3
CDY52784	Canola	cytosol	92.35	90.95
CDY22039	Canola	cytosol	91.84	90.0
AT4G02230.1	Thale cress	cytosol, mitochondrion	89.8	84.62
CDY37461	Canola	cytosol	92.35	83.41
CDY15438	Canola	cytosol	91.84	83.33
CDY65792	Canola	cytosol	91.33	83.26
VIT_05s0077g01840.t01	Wine grape	cytosol	87.24	83.01
CDY15263	Canola	cytosol	91.84	82.95
CDY32478	Canola	cytosol	91.84	82.95
CDX89944	Canola	cytosol	91.84	82.57
KRG96473	Soybean	nucleus	89.29	82.55
KRH69269	Soybean	nucleus	89.29	82.55
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	87.24	82.21
KRH31849	Soybean	nucleus	88.78	82.08
KRH68219	Soybean	nucleus	88.27	81.6
KRH31847	Soybean	nucleus	88.27	81.6
KRG96400	Soybean	nucleus	88.27	81.6
KRH68137	Soybean	nucleus	87.76	81.13
KRH69268	Soybean	nucleus	87.76	81.13
HORVU4Hr1G049670.2	Barley	cytosol	84.18	80.88
EES06302	Sorghum	cytosol, mitochondrion	85.2	80.68
PGSC0003DMT400046201	Potato	mitochondrion	87.76	80.37
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	89.8	80.0
TraesCS2D01G109000.1	Wheat	golgi	85.2	79.9
TraesCS2A01G108900.1	Wheat	cytosol	85.2	79.9
Os03t0579300-00	Rice	nucleus	83.67	79.61
Os03t0337800-01	Rice	nucleus	84.18	79.33
HORVU2Hr1G018700.1	Barley	plasma membrane	84.18	78.95
EES03157	Sorghum	cytosol, mitochondrion	83.16	78.74
TraesCS2A01G094200.1	Wheat	cytosol	84.69	78.67
TraesCS2D01G092800.1	Wheat	nucleus	84.69	77.93
EER89359	Sorghum	cytosol, mitochondrion	82.14	77.4
TraesCS4D01G170100.1	Wheat	cytosol	84.18	72.37
CDY01919	Canola	endoplasmic reticulum	69.9	70.62
Solyc09g031760.1.1	Tomato	cytosol	41.33	67.5
CDX92095	Canola	cytosol, plastid	55.1	67.08
TraesCS4A01G137200.1	Wheat	cytosol	71.94	62.39
CDY28336	Canola	cytosol, plastid	18.88	54.41
KRH76216	Soybean	cytosol, mitochondrion	81.12	46.76
CDX95905	Canola	nucleus	62.76	44.89

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078DNW9	EnsemblPlants:CDX90946
ProteinID:CDX90946	ProteinID:CDX90946.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
EnsemblPlantsGene:GSBRNA2T00151692001	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI0004EDC3B7	SEG:seg	:	:	:

Description

BnaA03g26260D

Coordinates

chrLK031864:+:1484994..1486292

Molecular Weight (calculated)

22825.5 Da

IEP (calculated)

11.913

GRAVY (calculated)

-1.024

Length

196 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL SASVLKCGKG KVWLDPNEGN DIAMANSRQN IRKLLNDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVP AAAPPV

Best Arabidopsis Sequence Match ( AT4G02230.1 )
(BLAST)

001: MVSLKLQKRL ASSVLKCGKR KVWLDPNEGS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARQLNIAK RKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDIP AAAPPAQTAE
201: VPAKKSKK

Arabidopsis Description

RPL19C60S ribosomal protein L19-3 [Source:UniProtKB/Swiss-Prot;Acc:P49693]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.