Factsheet for VIT_07s0005g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0077g01840.t01	Wine grape	cytosol	92.31	93.2
KRG96473	Soybean	nucleus	93.75	91.98
KRH31847	Soybean	nucleus	92.79	91.04
KRH69268	Soybean	nucleus	92.79	91.04
Bra036285.1-P	Field mustard	cytosol	84.13	87.94
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	89.9	87.79
CDY22039	Canola	cytosol	84.13	87.5
CDY52784	Canola	cytosol	83.65	87.44
Bra000887.1-P	Field mustard	cytosol	79.33	87.3
CDX90946	Canola	cytosol	82.21	87.24
Os03t0337800-01	Rice	nucleus	87.02	87.02
CDY18029	Canola	cytosol	73.56	86.93
HORVU4Hr1G049670.2	Barley	cytosol	84.62	86.27
HORVU2Hr1G018700.1	Barley	plasma membrane	86.54	86.12
Os03t0579300-00	Rice	nucleus	84.62	85.44
Solyc09g075430.2.1	Tomato	nucleus, unclear	89.42	85.32
TraesCS2A01G108900.1	Wheat	cytosol	85.58	85.17
TraesCS2D01G109000.1	Wheat	golgi	85.58	85.17
PGSC0003DMT400046201	Potato	mitochondrion	87.5	85.05
EES06302	Sorghum	cytosol, mitochondrion	84.62	85.02
TraesCS2A01G094200.1	Wheat	cytosol	86.06	84.83
CDY65792	Canola	cytosol	87.5	84.65
AT4G02230.1	Thale cress	cytosol, mitochondrion	84.62	84.62
EES03157	Sorghum	cytosol, mitochondrion	84.13	84.54
TraesCS2D01G092800.1	Wheat	nucleus	86.54	84.51
AT3G16780.1	Thale cress	cytosol	84.62	84.21
EER89359	Sorghum	cytosol, mitochondrion	84.13	84.13
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	88.94	84.09
CDY32478	Canola	cytosol	87.5	83.87
CDY37461	Canola	cytosol	87.02	83.41
Bra032586.1-P	Field mustard	cytosol, mitochondrion	80.77	83.17
Bra030509.1-P	Field mustard	cytosol	87.02	83.03
CDX89944	Canola	cytosol	87.02	83.03
CDY15263	Canola	cytosol	86.54	82.95
CDY15438	Canola	cytosol	86.06	82.87
AT1G02780.1	Thale cress	cytosol	85.1	82.71
TraesCS4D01G170100.1	Wheat	cytosol	85.1	77.63
Bra033346.1-P	Field mustard	cytosol	62.98	77.51
GSMUA_Achr1P26610_001	Banana	cytosol	70.67	76.96
Solyc09g031760.1.1	Tomato	cytosol	40.87	70.83
VIT_17s0000g02150.t01	Wine grape	cytosol	60.58	68.85
CDY01919	Canola	endoplasmic reticulum	63.46	68.04
CDX92095	Canola	cytosol, plastid	52.4	67.7
Bra022177.1-P	Field mustard	cytosol	65.38	65.38
TraesCS4A01G137200.1	Wheat	cytosol	70.67	65.04
Zm00001d053864_P001	Maize	cytosol	70.19	64.04
CDY28336	Canola	cytosol, plastid	19.23	58.82
TraesCS2B01G419700.1	Wheat	plastid	37.02	44.25
CDX95905	Canola	nucleus	58.17	44.16

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100246855	wikigene:100246855	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf
ProteinID:CCB59986	ProteinID:CCB59986.1	UniProt:F6HZ71	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	EntrezGene:LOC100246855	wikigene:LOC100246855	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka
SMART:SM01416	SUPFAM:SSF48140	TIGR:TC51880	UniParc:UPI00015CAF2C	ArrayExpress:VIT_07s0005g00840	EnsemblPlantsGene:VIT_07s0005g00840
EnsemblPlants:VIT_07s0005g00840.t01	unigene:Vvi.7518	RefSeq:XP_002272357	RefSeq:XP_002272357.1	SEG:seg	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:F6HZ71]

Coordinates

chr7:+:3456111..3458821

Molecular Weight (calculated)

24402.3 Da

IEP (calculated)

11.992

GRAVY (calculated)

-1.119

Length

208 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN IRKLVKDGFV IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKFARREER LAQGPAERAP PPAAVASQPT
201: DVSKKSKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.