Factsheet for VIT_05s0077g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	93.2	92.31
KRH68219	Soybean	nucleus	93.2	90.57
KRH68137	Soybean	nucleus	92.72	90.09
KRG96400	Soybean	nucleus	92.23	89.62
CDY52784	Canola	cytosol	85.44	88.44
Bra036285.1-P	Field mustard	cytosol	85.44	88.44
CDY22039	Canola	cytosol	85.44	88.0
Os03t0337800-01	Rice	nucleus	88.83	87.98
EES06302	Sorghum	cytosol, mitochondrion	87.86	87.44
Os03t0579300-00	Rice	nucleus	87.38	87.38
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	90.29	87.32
Bra000887.1-P	Field mustard	cytosol	80.1	87.3
CDX90946	Canola	cytosol	83.01	87.24
HORVU2Hr1G018700.1	Barley	plasma membrane	88.35	87.08
CDY18029	Canola	cytosol	74.27	86.93
TraesCS2A01G108900.1	Wheat	cytosol	87.86	86.6
TraesCS2D01G109000.1	Wheat	golgi	87.86	86.6
EES03157	Sorghum	cytosol, mitochondrion	86.89	86.47
HORVU4Hr1G049670.2	Barley	cytosol	85.44	86.27
TraesCS2A01G094200.1	Wheat	cytosol	87.86	85.78
EER89359	Sorghum	cytosol, mitochondrion	86.41	85.58
PGSC0003DMT400046201	Potato	mitochondrion	88.83	85.51
TraesCS2D01G092800.1	Wheat	nucleus	88.35	85.45
Solyc09g075430.2.1	Tomato	nucleus, unclear	89.32	84.4
AT4G02230.1	Thale cress	cytosol, mitochondrion	84.95	84.13
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	89.81	84.09
CDY15438	Canola	cytosol	87.38	83.33
CDY65792	Canola	cytosol	86.41	82.79
AT3G16780.1	Thale cress	cytosol	83.98	82.78
AT1G02780.1	Thale cress	cytosol	85.44	82.24
CDY32478	Canola	cytosol	86.41	82.03
Bra030509.1-P	Field mustard	cytosol	86.41	81.65
CDY37461	Canola	cytosol	85.92	81.57
CDX89944	Canola	cytosol	85.92	81.19
Bra032586.1-P	Field mustard	cytosol, mitochondrion	79.61	81.19
CDY15263	Canola	cytosol	85.44	81.11
Bra033346.1-P	Field mustard	cytosol	65.05	79.29
GSMUA_Achr1P26610_001	Banana	cytosol	73.3	79.06
TraesCS4D01G170100.1	Wheat	cytosol	86.89	78.51
Solyc09g031760.1.1	Tomato	cytosol	39.81	68.33
CDY01919	Canola	endoplasmic reticulum	64.08	68.04
VIT_17s0000g02150.t01	Wine grape	cytosol	60.19	67.76
CDX92095	Canola	cytosol, plastid	52.91	67.7
Bra022177.1-P	Field mustard	cytosol	66.5	65.87
TraesCS4A01G137200.1	Wheat	cytosol	71.36	65.04
Zm00001d053864_P001	Maize	cytosol	70.87	64.04
CDY28336	Canola	cytosol, plastid	19.42	58.82
KRH76216	Soybean	cytosol, mitochondrion	84.95	51.47
TraesCS2B01G419700.1	Wheat	plastid	36.89	43.68
CDX95905	Canola	nucleus	57.77	43.43

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100267158	wikigene:100267158	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf
ProteinID:CBI22958	ProteinID:CBI22958.3	ncoils:Coil	UniProt:D7SYA1	EMBL:FN595246	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	InterPro:IPR015972	EntrezGene:LOC100267158	wikigene:LOC100267158	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	TIGR:TC69679	UniParc:UPI0001983211	ArrayExpress:VIT_05s0077g01840
EnsemblPlantsGene:VIT_05s0077g01840	EnsemblPlants:VIT_05s0077g01840.t01	RefSeq:XP_002272727	RefSeq:XP_002272727.1	SEG:seg	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:D7SYA1]

Coordinates

chr5:-:1454477..1457869

Molecular Weight (calculated)

24166.1 Da

IEP (calculated)

11.992

GRAVY (calculated)

-1.139

Length

206 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN VRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKLARREER LAQGPVERAP PASAPQPAEG
201: TKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.