CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045069_P001	Maize	plasma membrane, plastid	96.62	96.15
EER89359	Sorghum	cytosol, mitochondrion	95.65	95.19
Os03t0337800-01	Rice	nucleus	93.72	93.27
EES06302	Sorghum	cytosol, mitochondrion	92.75	92.75
HORVU4Hr1G049670.2	Barley	cytosol	91.3	92.65
HORVU2Hr1G018700.1	Barley	plasma membrane	92.75	91.87
TraesCS2B01G126500.1	Wheat	unclear	90.82	91.26
Os03t0579300-00	Rice	nucleus	90.82	91.26
TraesCS2B01G109000.1	Wheat	cytosol	91.79	90.05
TraesCS2A01G094200.1	Wheat	cytosol	91.79	90.05
TraesCS2D01G092800.1	Wheat	nucleus	92.27	89.67
TraesCS2D01G109000.1	Wheat	golgi	89.86	89.0
TraesCS2A01G108900.1	Wheat	cytosol	89.86	89.0
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	86.96	87.8
GSMUA_Achr9P20320_001	Banana	cytosol	85.02	87.56
VIT_05s0077g01840.t01	Wine grape	cytosol	86.47	86.89
GSMUA_Achr3P00710_001	Banana	plasma membrane	85.99	86.83
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	84.54	86.21
KRH68219	Soybean	nucleus	87.44	85.38
KRH31849	Soybean	nucleus	86.47	84.43
KRH31847	Soybean	nucleus	86.47	84.43
KRG96473	Soybean	nucleus	86.47	84.43
KRH69269	Soybean	nucleus	86.47	84.43
KRH69268	Soybean	nucleus	86.47	84.43
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	84.54	84.13
KRH68137	Soybean	nucleus	85.51	83.49
CDX90946	Canola	cytosol	78.74	83.16
Bra000887.1-P	Field mustard	cytosol	75.85	83.07
KRG96400	Soybean	nucleus	85.02	83.02
CDY18029	Canola	cytosol	70.53	82.95
CDY52784	Canola	cytosol	79.71	82.91
Bra036285.1-P	Field mustard	cytosol	79.71	82.91
CDY22039	Canola	cytosol	79.71	82.5
TraesCS4D01G170100.1	Wheat	cytosol	90.34	82.02
AT4G02230.1	Thale cress	cytosol, mitochondrion	82.13	81.73
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	84.06	81.69
PGSC0003DMT400046201	Potato	mitochondrion	83.09	80.37
CDY65792	Canola	cytosol	83.09	80.0
AT3G16780.1	Thale cress	cytosol	80.68	79.9
Solyc09g075430.2.1	Tomato	nucleus, unclear	84.06	79.82
AT1G02780.1	Thale cress	cytosol	82.13	79.44
GSMUA_Achr1P26610_001	Banana	cytosol	72.95	79.06
CDY15438	Canola	cytosol	82.13	78.7
CDX89944	Canola	cytosol	82.61	78.44
Bra030509.1-P	Field mustard	cytosol	82.61	78.44
CDY15263	Canola	cytosol	82.13	78.34
CDY32478	Canola	cytosol	82.13	78.34
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	83.09	78.18
CDY37461	Canola	cytosol	81.64	77.88
Bra032586.1-P	Field mustard	cytosol, mitochondrion	75.36	77.23
Bra033346.1-P	Field mustard	cytosol	62.32	76.33
GSMUA_Achr1P24740_001	Banana	cytosol	54.11	71.79
VIT_17s0000g02150.t01	Wine grape	cytosol	59.9	67.76
Solyc09g031760.1.1	Tomato	cytosol	38.16	65.83
CDY01919	Canola	endoplasmic reticulum	59.42	63.4
CDX92095	Canola	cytosol, plastid	49.28	63.35
Bra022177.1-P	Field mustard	cytosol	62.8	62.5
CDY28336	Canola	cytosol, plastid	18.84	57.35
AT4G16030.1	Thale cress	cytosol, mitochondrion	29.95	54.39
KRH76216	Soybean	cytosol, mitochondrion	78.26	47.65
CDX95905	Canola	nucleus	55.07	41.61

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EntrezGene:8078633	UniProt:C5XNT6
EnsemblPlants:EES03157	ProteinID:EES03157	ProteinID:EES03157.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR015972
HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e
InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416	EnsemblPlantsGene:SORBI_3003G196800	SUPFAM:SSF48140
unigene:Sbi.639	UniParc:UPI0001A84DC7	RefSeq:XP_002458037.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:52171758..52174518

Molecular Weight (calculated)

24106.0 Da

IEP (calculated)

11.959

GRAVY (calculated)

-1.059

Length

207 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGKG KVWLDPNEVS EISMANSRQN IRKLVKDGFI IKKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN MFKNKRVLME SIHKSKAEKL REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPREPTA PVSATAPSAG
201: APKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.