Factsheet for Os03t0579300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G109000.1	Wheat	golgi	96.12	94.74
TraesCS2A01G108900.1	Wheat	cytosol	96.12	94.74
Os03t0337800-01	Rice	nucleus	95.63	94.71
TraesCS2B01G126500.1	Wheat	unclear	93.2	93.2
HORVU2Hr1G018700.1	Barley	plasma membrane	93.2	91.87
Zm00001d045069_P001	Maize	plasma membrane, plastid	92.23	91.35
EER89359	Sorghum	cytosol, mitochondrion	91.75	90.87
Zm00001d044287_P001	Maize	plasma membrane, plastid	91.26	90.82
EES03157	Sorghum	cytosol, mitochondrion	91.26	90.82
TraesCS2B01G109000.1	Wheat	cytosol	92.23	90.05
TraesCS2A01G094200.1	Wheat	cytosol	92.23	90.05
EES06302	Sorghum	cytosol, mitochondrion	90.29	89.86
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	89.32	89.76
TraesCS2D01G092800.1	Wheat	nucleus	92.72	89.67
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	87.38	88.67
GSMUA_Achr9P20320_001	Banana	cytosol	86.41	88.56
VIT_05s0077g01840.t01	Wine grape	cytosol	87.38	87.38
GSMUA_Achr3P00710_001	Banana	plasma membrane	85.92	86.34
KRH68219	Soybean	nucleus	88.35	85.85
KRG96400	Soybean	nucleus	87.86	85.38
KRH68137	Soybean	nucleus	87.38	84.91
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	85.44	84.62
KRH69269	Soybean	nucleus	86.89	84.43
KRH31849	Soybean	nucleus	86.89	84.43
TraesCS4D01G170100.1	Wheat	cytosol	93.2	84.21
CDY18029	Canola	cytosol	71.84	84.09
Zm00001d015300_P002	Maize	cytosol, mitochondrion	89.81	84.09
KRG96473	Soybean	nucleus	86.41	83.96
KRH31847	Soybean	nucleus	86.41	83.96
KRH69268	Soybean	nucleus	86.41	83.96
CDX90946	Canola	cytosol	79.61	83.67
Bra000887.1-P	Field mustard	cytosol	76.7	83.6
CDY52784	Canola	cytosol	80.58	83.42
Bra036285.1-P	Field mustard	cytosol	80.58	83.42
CDY22039	Canola	cytosol	80.58	83.0
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.01	82.21
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	84.47	81.69
PGSC0003DMT400046201	Potato	mitochondrion	83.98	80.84
CDY65792	Canola	cytosol	83.01	79.53
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	84.47	79.09
AT1G02780.1	Thale cress	cytosol	82.04	78.97
AT3G16780.1	Thale cress	cytosol	80.1	78.95
CDY15438	Canola	cytosol	82.52	78.7
GSMUA_Achr1P26610_001	Banana	cytosol	72.82	78.53
Solyc09g075430.2.1	Tomato	nucleus, unclear	83.01	78.44
CDY32478	Canola	cytosol	82.52	78.34
Bra030509.1-P	Field mustard	cytosol	82.52	77.98
CDY15263	Canola	cytosol	82.04	77.88
CDY37461	Canola	cytosol	82.04	77.88
CDX89944	Canola	cytosol	82.04	77.52
Bra032586.1-P	Field mustard	cytosol, mitochondrion	75.73	77.23
Bra033346.1-P	Field mustard	cytosol	62.62	76.33
GSMUA_Achr1P24740_001	Banana	cytosol	54.37	71.79
VIT_17s0000g02150.t01	Wine grape	cytosol	59.71	67.21
CDY01919	Canola	endoplasmic reticulum	59.71	63.4
CDX92095	Canola	cytosol, plastid	49.51	63.35
Solyc09g031760.1.1	Tomato	cytosol	36.89	63.33
Bra022177.1-P	Field mustard	cytosol	62.62	62.02
CDY28336	Canola	cytosol, plastid	18.93	57.35
AT4G16030.1	Thale cress	cytosol, mitochondrion	29.13	52.63
KRH76216	Soybean	cytosol, mitochondrion	78.64	47.65
CDX95905	Canola	nucleus	55.34	41.61

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	EntrezGene:4332773	EntrezGene:4333317	InterPro:60S_ribosomal_L19/L19e_sf
ProteinID:AAP05800.1	ProteinID:AAT76364.1	ProteinID:ABF95832.1	ProteinID:ABF97284.1	EMBL:AK059309	EMBL:AK102721
ProteinID:BAF11965.1	ProteinID:BAS84098.1	ProteinID:BAS85049.1	ProteinID:EAZ26849.1	ProteinID:EAZ27589.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
InterPro:IPR015972	HAMAP:MF_01475	EnsemblPlantsGene:Os03g0579300	EnsemblPlants:Os03t0579300-00	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	UniProt:Q84NX8	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI000018D576	RefSeq:XP_015632604.1	RefSeq:XP_015632739.1
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L19. (Os03t0579300-00)

Coordinates

chr3:-:21238864..21240807

Molecular Weight (calculated)

24123.0 Da

IEP (calculated)

11.898

GRAVY (calculated)

-1.101

Length

206 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL ASSVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IKKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARRDER LAQGPREPAA PAVPAQTAAA
201: PKKYKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.