Factsheet for GSMUA_Achr7P03780_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P20320_001	Banana	cytosol	92.2	94.03
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	92.68	93.6
GSMUA_Achr3P00710_001	Banana	plasma membrane	92.2	92.2
Os03t0337800-01	Rice	nucleus	91.71	90.38
HORVU4Hr1G049670.2	Barley	cytosol	89.27	89.71
TraesCS2D01G109000.1	Wheat	golgi	91.22	89.47
TraesCS2A01G108900.1	Wheat	cytosol	91.22	89.47
EES06302	Sorghum	cytosol, mitochondrion	90.24	89.37
Os03t0579300-00	Rice	nucleus	89.76	89.32
HORVU2Hr1G018700.1	Barley	plasma membrane	90.24	88.52
EES03157	Sorghum	cytosol, mitochondrion	87.8	86.96
TraesCS2A01G094200.1	Wheat	cytosol	89.27	86.73
TraesCS2D01G092800.1	Wheat	nucleus	89.76	86.39
EER89359	Sorghum	cytosol, mitochondrion	86.83	85.58
GSMUA_Achr1P26610_001	Banana	cytosol	79.02	84.82
TraesCS4D01G170100.1	Wheat	cytosol	90.73	81.58
GSMUA_Achr1P24740_001	Banana	cytosol	59.02	77.56
TraesCS4A01G137200.1	Wheat	cytosol	72.2	65.49
AT4G16030.1	Thale cress	cytosol, mitochondrion	29.76	53.51

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr7G03780_001	EnsemblPlants:GSMUA_Achr7P03780_001	EnsemblPlants:GSMUA_Achr7T03780_001
InterPro:IPR015972	UniProt:M0TEG8	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI000296CF29	SEG:seg	:	:	:

Description

60S ribosomal protein L19-2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G03780_001]

Coordinates

chr7:-:2963763..2967533

Molecular Weight (calculated)

23884.6 Da

IEP (calculated)

12.029

GRAVY (calculated)

-1.094

Length

205 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN IRKLVKDGFV IRKPTKIHSR SRARRALEAK RKGRHSGYGK RRGTREARLP TKVLWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPGDRAP AGAASQSEAP
201: KKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.