Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P00710_001 | Banana | plasma membrane | 54.39 | 30.24 |
| GSMUA_Achr8P33790_001 | Banana | cytosol, mitochondrion | 53.51 | 30.05 |
| EES03157 | Sorghum | cytosol, mitochondrion | 54.39 | 29.95 |
| EES06302 | Sorghum | cytosol, mitochondrion | 54.39 | 29.95 |
| GSMUA_Achr9P20320_001 | Banana | cytosol | 52.63 | 29.85 |
| GSMUA_Achr7P03780_001 | Banana | cytosol, mitochondrion | 53.51 | 29.76 |
| EER89359 | Sorghum | cytosol, mitochondrion | 53.51 | 29.33 |
| Os03t0337800-01 | Rice | nucleus | 53.51 | 29.33 |
| Os03t0579300-00 | Rice | nucleus | 52.63 | 29.13 |
| HORVU4Hr1G049670.2 | Barley | cytosol | 51.75 | 28.92 |
| AT4G02230.1 | Thale cress | cytosol, mitochondrion | 52.63 | 28.85 |
| HORVU2Hr1G018700.1 | Barley | plasma membrane | 52.63 | 28.71 |
| AT1G02780.1 | Thale cress | cytosol | 53.51 | 28.5 |
| TraesCS2A01G094200.1 | Wheat | cytosol | 52.63 | 28.44 |
| AT3G16780.1 | Thale cress | cytosol | 51.75 | 28.23 |
| TraesCS2D01G109000.1 | Wheat | golgi | 51.75 | 28.23 |
| TraesCS2A01G108900.1 | Wheat | cytosol | 51.75 | 28.23 |
| TraesCS2D01G092800.1 | Wheat | nucleus | 52.63 | 28.17 |
| TraesCS4D01G170100.1 | Wheat | cytosol | 50.88 | 25.44 |
| TraesCS4A01G137200.1 | Wheat | cytosol | 41.23 | 20.8 |
Protein Annotations
| Gene3D:1.10.1200.240 | MapMan:17.1.2.1.20 | InterPro:60S_ribosomal_L19/L19e_sf | EntrezGene:827287 | UniProt:A0A178V3F6 | ProteinID:AEE83683.1 |
| EMBL:AK175588 | EMBL:AK175808 | ArrayExpress:AT4G16030 | EnsemblPlantsGene:AT4G16030 | RefSeq:AT4G16030 | TAIR:AT4G16030 |
| RefSeq:AT4G16030-TAIR-G | EnsemblPlants:AT4G16030.1 | TAIR:AT4G16030.1 | Unigene:At.33119 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 |
| RefSeq:NP_193338.2 | ProteinID:OAP00426.1 | PFAM:PF01280 | PANTHER:PTHR10722 | PANTHER:PTHR10722:SF6 | UniProt:Q680Q9 |
| InterPro:Ribosomal_L19/L19e | SMART:SM01416 | SUPFAM:SSF48140 | UniParc:UPI000042BB0D | SEG:seg | : |
Description
Probable ribosomal protein [Source:UniProtKB/TrEMBL;Acc:Q680Q9]
Coordinates
chr4:+:9083447..9084727
Molecular Weight (calculated)
13711.2 Da
IEP (calculated)
11.274
GRAVY (calculated)
-0.866
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSIHFHSRS RARRKCRHTG YGKDTMEALR RIMKRLTRRL KMLKRLLKKF CWNKKIDKLV YYHDMFMKVK GKVYKNKCVL MESMHKSSRE RKFSGSEMRL
101: ALEPEGEKTA SAPQ
101: ALEPEGEKTA SAPQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.