Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G02230.1 | Thale cress | cytosol, mitochondrion | 85.17 | 85.58 |
| VIT_07s0005g00840.t01 | Wine grape | cytosol, mitochondrion | 84.21 | 84.62 |
| VIT_05s0077g01840.t01 | Wine grape | cytosol | 82.78 | 83.98 |
| KRH68219 | Soybean | nucleus | 84.69 | 83.49 |
| KRG96473 | Soybean | nucleus | 84.69 | 83.49 |
| AT1G02780.1 | Thale cress | cytosol | 84.69 | 82.71 |
| KRH69269 | Soybean | nucleus | 83.73 | 82.55 |
| KRH31847 | Soybean | nucleus | 83.73 | 82.55 |
| KRG96400 | Soybean | nucleus | 83.25 | 82.08 |
| KRH69268 | Soybean | nucleus | 83.25 | 82.08 |
| KRH31849 | Soybean | nucleus | 83.25 | 82.08 |
| KRH68137 | Soybean | nucleus | 82.78 | 81.6 |
| HORVU4Hr1G049670.2 | Barley | cytosol | 78.95 | 80.88 |
| PGSC0003DMT400046201 | Potato | mitochondrion | 82.78 | 80.84 |
| EES03157 | Sorghum | cytosol, mitochondrion | 79.9 | 80.68 |
| HORVU2Hr1G018700.1 | Barley | plasma membrane | 80.38 | 80.38 |
| TraesCS2D01G109000.1 | Wheat | golgi | 80.38 | 80.38 |
| TraesCS2A01G108900.1 | Wheat | cytosol | 80.38 | 80.38 |
| EER89359 | Sorghum | cytosol, mitochondrion | 79.9 | 80.29 |
| Os03t0337800-01 | Rice | nucleus | 79.9 | 80.29 |
| EES06302 | Sorghum | cytosol, mitochondrion | 79.43 | 80.19 |
| Os03t0579300-00 | Rice | nucleus | 78.95 | 80.1 |
| TraesCS2D01G092800.1 | Wheat | nucleus | 80.86 | 79.34 |
| TraesCS2A01G094200.1 | Wheat | cytosol | 79.9 | 79.15 |
| PGSC0003DMT400081324 | Potato | cytosol, mitochondrion | 81.82 | 77.73 |
| GSMUA_Achr1P26610_001 | Banana | cytosol | 68.42 | 74.87 |
| TraesCS4D01G170100.1 | Wheat | cytosol | 78.95 | 72.37 |
| Solyc09g031760.1.1 | Tomato | cytosol | 38.28 | 66.67 |
| TraesCS4A01G137200.1 | Wheat | cytosol | 66.99 | 61.95 |
| Zm00001d053864_P001 | Maize | cytosol | 64.59 | 59.21 |
| AT4G16030.1 | Thale cress | cytosol, mitochondrion | 28.23 | 51.75 |
| KRH76216 | Soybean | cytosol, mitochondrion | 75.12 | 46.18 |
| TraesCS2B01G419700.1 | Wheat | plastid | 34.45 | 41.38 |
Protein Annotations
| Gene3D:1.10.1200.240 | Gene3D:1.10.1650.10 | MapMan:17.1.2.1.20 | InterPro:60S_ribosomal_L19/L19e_sf | EntrezGene:820931 | ProteinID:AEE75864.1 |
| ArrayExpress:AT3G16780 | EnsemblPlantsGene:AT3G16780 | RefSeq:AT3G16780 | TAIR:AT3G16780 | RefSeq:AT3G16780-TAIR-G | EnsemblPlants:AT3G16780.1 |
| TAIR:AT3G16780.1 | EMBL:AY045610 | EMBL:AY090335 | Unigene:At.5836 | ProteinID:BAB02770.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR015972 |
| HAMAP:MF_01475 | RefSeq:NP_188300.1 | PFAM:PF01280 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00526 | PANTHER:PTHR10722 |
| PANTHER:PTHR10722:SF11 | UniProt:Q9LUQ6 | InterPro:Ribosomal_L19/L19e | InterPro:Ribosomal_L19/L19e_CS | InterPro:Ribosomal_L19/L19e_dom1 | InterPro:Ribosomal_L19_euka |
| SMART:SM01416 | SUPFAM:SSF48140 | UniParc:UPI0000001159 | SEG:seg | : | : |
Description
RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
Coordinates
chr3:+:5708826..5710579
Molecular Weight (calculated)
24331.2 Da
IEP (calculated)
11.844
GRAVY (calculated)
-1.097
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.