Factsheet for Zm00001d053864_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26610_001	Banana	cytosol	64.04	76.44
Zm00001d045069_P001	Maize	plasma membrane, plastid	67.98	74.52
Zm00001d044287_P001	Maize	plasma membrane, plastid	67.11	73.91
VIT_05s0077g01840.t01	Wine grape	cytosol	64.04	70.87
Bra036285.1-P	Field mustard	cytosol	61.4	70.35
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	64.04	70.19
KRH68137	Soybean	nucleus	64.91	69.81
KRH31849	Soybean	nucleus	64.91	69.81
KRG96400	Soybean	nucleus	64.47	69.34
Zm00001d015300_P002	Maize	cytosol, mitochondrion	66.67	69.09
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	64.47	69.01
KRH31847	Soybean	nucleus	64.04	68.87
KRH69269	Soybean	nucleus	64.04	68.87
AT4G02230.1	Thale cress	cytosol, mitochondrion	62.72	68.75
KRH69268	Soybean	nucleus	63.6	68.4
KRH68219	Soybean	nucleus	63.6	68.4
Bra000887.1-P	Field mustard	cytosol	56.58	68.25
PGSC0003DMT400046201	Potato	mitochondrion	63.6	67.76
KRG96473	Soybean	nucleus	62.72	67.45
Solyc09g075430.2.1	Tomato	nucleus, unclear	64.04	66.97
Bra030509.1-P	Field mustard	cytosol	63.16	66.06
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	63.6	65.91
AT1G02780.1	Thale cress	cytosol	61.4	65.42
AT3G16780.1	Thale cress	cytosol	59.21	64.59
Solyc09g031760.1.1	Tomato	cytosol	33.77	64.17
Bra032586.1-P	Field mustard	cytosol, mitochondrion	56.58	63.86
Bra033346.1-P	Field mustard	cytosol	44.74	60.35
CDY28336	Canola	cytosol, plastid	17.11	57.35
Bra022177.1-P	Field mustard	cytosol	49.56	54.33
TraesCS2B01G419700.1	Wheat	plastid	32.46	42.53
KRH76216	Soybean	cytosol, mitochondrion	57.46	38.53

Protein Annotations

Gene3D:1.10.1200.240	EntrezGene:100284115	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	UniProt:A0A1D6QSV9	ProteinID:AQK60553.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	PFAM:PF01280	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11
InterPro:Ribosomal_L19/L19e	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI000844139C	EnsemblPlantsGene:Zm00001d053864	EnsemblPlants:Zm00001d053864_P001
EnsemblPlants:Zm00001d053864_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L19-2

Coordinates

chr4:+:242557991..242560340

Molecular Weight (calculated)

26217.2 Da

IEP (calculated)

12.169

GRAVY (calculated)

-1.083

Length

228 amino acids

Sequence
(BLAST)

001: MGHGPIETNG VLVRFSAENP NPRGHFGHVA ASLSPLPPHP GEALIHRLGQ RLQNLRVAGH NIRKLVKDGF IIKKPQKIHS RSRARRAHEA KQKGRHSGYG
101: KRRGTREARL PTKVLWMRRM RVLRRLLRKY REAKKIDKHM YHDMYMKVKG NSFKNKRVLM ESIHKSKAEK AREKTLSDQF EARRAKSKAS RERKNARREE
201: RLAQGPREIP PPVSATAPTT GAPKKAKK

Best Arabidopsis Sequence Match ( AT4G16030.1 )
(BLAST)

001: MVSIHFHSRS RARRKCRHTG YGKDTMEALR RIMKRLTRRL KMLKRLLKKF CWNKKIDKLV YYHDMFMKVK GKVYKNKCVL MESMHKSSRE RKFSGSEMRL
101: ALEPEGEKTA SAPQ

Arabidopsis Description

Probable ribosomal protein [Source:UniProtKB/TrEMBL;Acc:Q680Q9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.