Factsheet for Solyc09g075430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, unclear

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	94.95	94.09
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	91.28	93.43
KRH31849	Soybean	nucleus	88.07	90.57
KRH69269	Soybean	nucleus	87.61	90.09
KRH31847	Soybean	nucleus	87.16	89.62
KRG96473	Soybean	nucleus	87.16	89.62
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	85.32	89.42
VIT_05s0077g01840.t01	Wine grape	cytosol	84.4	89.32
KRH68219	Soybean	nucleus	86.7	89.15
KRH69268	Soybean	nucleus	86.7	89.15
KRH68137	Soybean	nucleus	84.86	87.26
KRG96400	Soybean	nucleus	84.4	86.79
Os03t0337800-01	Rice	nucleus	81.65	85.58
HORVU4Hr1G049670.2	Barley	cytosol	79.82	85.29
EER89359	Sorghum	cytosol, mitochondrion	81.19	85.1
HORVU2Hr1G018700.1	Barley	plasma membrane	81.19	84.69
EES03157	Sorghum	cytosol, mitochondrion	79.82	84.06
EES06302	Sorghum	cytosol, mitochondrion	79.82	84.06
TraesCS2D01G092800.1	Wheat	nucleus	81.65	83.57
TraesCS2A01G094200.1	Wheat	cytosol	80.73	83.41
TraesCS2A01G108900.1	Wheat	cytosol	79.82	83.25
TraesCS2D01G109000.1	Wheat	golgi	79.82	83.25
Os03t0579300-00	Rice	nucleus	78.44	83.01
Solyc09g031760.1.1	Tomato	cytosol	42.66	77.5
GSMUA_Achr1P26610_001	Banana	cytosol	67.89	77.49
TraesCS4D01G170100.1	Wheat	cytosol	80.28	76.75
Zm00001d053864_P001	Maize	cytosol	66.97	64.04
TraesCS4A01G137200.1	Wheat	cytosol	64.68	62.39
KRH76216	Soybean	cytosol, mitochondrion	81.19	52.06
TraesCS2B01G419700.1	Wheat	plastid	34.4	43.1

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	UniProt:K4CVC0	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	EnsemblPlantsGene:Solyc09g075430.2	EnsemblPlants:Solyc09g075430.2.1	UniParc:UPI000276BB5D	SEG:seg	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:K4CVC0]

Coordinates

chr9:+:67131593..67133946

Molecular Weight (calculated)

25186.2 Da

IEP (calculated)

12.053

GRAVY (calculated)

-1.123

Length

218 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEGN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKVLWMRRLR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME NIHKTKAEKA REKTLSDQFE ARRAKNKASR ERKFARREER LAQGPGEKPV QPAAPAPAPA
201: ATAPPAKTAQ GGSKKSKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.