Factsheet for PGSC0003DMT400081324

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
vacuole 1
mitochondrion 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075430.2.1	Tomato	nucleus, unclear	94.09	94.95
PGSC0003DMT400046201	Potato	mitochondrion	90.45	92.99
CDY18029	Canola	cytosol	73.18	91.48
KRH31849	Soybean	nucleus	87.27	90.57
KRH68219	Soybean	nucleus	86.82	90.09
Bra000887.1-P	Field mustard	cytosol	77.27	89.95
VIT_05s0077g01840.t01	Wine grape	cytosol	84.09	89.81
CDX90946	Canola	cytosol	80.0	89.8
KRH69269	Soybean	nucleus	86.36	89.62
KRG96473	Soybean	nucleus	85.91	89.15
Bra036285.1-P	Field mustard	cytosol	80.45	88.94
CDY52784	Canola	cytosol	80.45	88.94
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	84.09	88.94
KRH31847	Soybean	nucleus	85.45	88.68
CDY22039	Canola	cytosol	80.45	88.5
KRH68137	Soybean	nucleus	85.0	88.21
KRH69268	Soybean	nucleus	85.0	88.21
KRG96400	Soybean	nucleus	85.0	88.21
HORVU4Hr1G049670.2	Barley	cytosol	79.09	85.29
Os03t0337800-01	Rice	nucleus	80.45	85.1
AT1G02780.1	Thale cress	cytosol	82.73	85.05
AT4G02230.1	Thale cress	cytosol, mitochondrion	80.0	84.62
EES06302	Sorghum	cytosol, mitochondrion	79.55	84.54
Os03t0579300-00	Rice	nucleus	79.09	84.47
TraesCS2A01G108900.1	Wheat	cytosol	80.0	84.21
TraesCS2D01G109000.1	Wheat	golgi	80.0	84.21
CDY15438	Canola	cytosol	82.27	83.8
EER89359	Sorghum	cytosol, mitochondrion	79.09	83.65
CDY32478	Canola	cytosol	82.27	83.41
HORVU2Hr1G018700.1	Barley	plasma membrane	79.09	83.25
EES03157	Sorghum	cytosol, mitochondrion	78.18	83.09
CDX89944	Canola	cytosol	82.27	83.03
CDY37461	Canola	cytosol	81.82	82.95
CDY65792	Canola	cytosol	80.91	82.79
Bra032586.1-P	Field mustard	cytosol, mitochondrion	75.91	82.67
Bra030509.1-P	Field mustard	cytosol	81.82	82.57
CDY15263	Canola	cytosol	81.36	82.49
TraesCS2A01G094200.1	Wheat	cytosol	78.64	81.99
AT3G16780.1	Thale cress	cytosol	77.73	81.82
TraesCS2D01G092800.1	Wheat	nucleus	79.09	81.69
Bra033346.1-P	Field mustard	cytosol	61.36	79.88
GSMUA_Achr1P26610_001	Banana	cytosol	68.18	78.53
TraesCS4D01G170100.1	Wheat	cytosol	80.0	77.19
CDY01919	Canola	endoplasmic reticulum	62.27	70.62
CDX92095	Canola	cytosol, plastid	48.64	66.46
Bra022177.1-P	Field mustard	cytosol	61.36	64.9
Zm00001d053864_P001	Maize	cytosol	65.91	63.6
TraesCS4A01G137200.1	Wheat	cytosol	64.55	62.83
KRH76216	Soybean	cytosol, mitochondrion	78.64	50.88
CDX95905	Canola	nucleus	55.0	44.16
TraesCS2B01G419700.1	Wheat	plastid	34.09	43.1

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:102578588	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR015972	UniProt:M1D4K6
HAMAP:MF_01475	PFAM:PF01280	EnsemblPlantsGene:PGSC0003DMG400031796	PGSC:PGSC0003DMG400031796	EnsemblPlants:PGSC0003DMT400081324	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka
SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0002957B33	RefSeq:XP_006359866.1	SEG:seg	:

Description

Ribosomal protein L19 [Source:PGSC_GENE;Acc:PGSC0003DMG400031796]

Coordinates

chr9:+:52919752..52921917

Molecular Weight (calculated)

25298.3 Da

IEP (calculated)

12.053

GRAVY (calculated)

-1.085

Length

220 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEGN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKVLWMRRLR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME NIHKTKAEKA REKTLSDQFE ARRAKNKASR ERKFARREER LAQGPGEKPV QPAAPAPAPA
201: AAAAAPPAKT AQGGSKKSKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.