CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69268	Soybean	nucleus	98.11	98.11
KRG96473	Soybean	nucleus	96.23	96.23
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	91.04	92.79
KRH68219	Soybean	nucleus	91.51	91.51
KRH31849	Soybean	nucleus	90.09	90.09
KRH69269	Soybean	nucleus	89.62	89.62
KRG96400	Soybean	nucleus	89.15	89.15
Bra000887.1-P	Field mustard	cytosol	78.77	88.36
CDX90946	Canola	cytosol	81.6	88.27
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	88.68	88.26
KRH68137	Soybean	nucleus	88.21	88.21
CDY18029	Canola	cytosol	73.11	88.07
Os03t0337800-01	Rice	nucleus	86.32	87.98
HORVU4Hr1G049670.2	Barley	cytosol	84.43	87.75
Bra036285.1-P	Field mustard	cytosol	82.08	87.44
CDY52784	Canola	cytosol	82.08	87.44
Solyc09g075430.2.1	Tomato	nucleus, unclear	89.62	87.16
HORVU2Hr1G018700.1	Barley	plasma membrane	85.85	87.08
EER89359	Sorghum	cytosol, mitochondrion	85.38	87.02
CDY22039	Canola	cytosol	82.08	87.0
EES03157	Sorghum	cytosol, mitochondrion	84.43	86.47
EES06302	Sorghum	cytosol, mitochondrion	84.43	86.47
Os03t0579300-00	Rice	nucleus	83.96	86.41
TraesCS2A01G094200.1	Wheat	cytosol	85.38	85.78
TraesCS2A01G108900.1	Wheat	cytosol	84.43	85.65
TraesCS2D01G109000.1	Wheat	golgi	84.43	85.65
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	88.68	85.45
TraesCS2D01G092800.1	Wheat	nucleus	85.85	85.45
PGSC0003DMT400046201	Potato	mitochondrion	85.85	85.05
AT1G02780.1	Thale cress	cytosol	85.85	85.05
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.02	84.62
AT3G16780.1	Thale cress	cytosol	82.55	83.73
CDY65792	Canola	cytosol	84.91	83.72
CDY32478	Canola	cytosol	84.91	82.95
CDX89944	Canola	cytosol	84.91	82.57
CDY15263	Canola	cytosol	84.43	82.49
CDY37461	Canola	cytosol	84.43	82.49
Bra032586.1-P	Field mustard	cytosol, mitochondrion	78.3	82.18
Bra030509.1-P	Field mustard	cytosol	84.43	82.11
CDY15438	Canola	cytosol	83.02	81.48
TraesCS4D01G170100.1	Wheat	cytosol	84.91	78.95
Bra033346.1-P	Field mustard	cytosol	62.74	78.7
GSMUA_Achr1P26610_001	Banana	cytosol	70.75	78.53
Solyc09g031760.1.1	Tomato	cytosol	40.57	71.67
CDX92095	Canola	cytosol, plastid	51.42	67.7
CDY01919	Canola	endoplasmic reticulum	61.79	67.53
TraesCS4A01G137200.1	Wheat	cytosol	70.28	65.93
Bra022177.1-P	Field mustard	cytosol	64.62	65.87
Zm00001d053864_P001	Maize	cytosol	68.87	64.04
CDY28336	Canola	cytosol, plastid	18.87	58.82
KRH76216	Soybean	cytosol, mitochondrion	81.13	50.59
TraesCS2B01G419700.1	Wheat	plastid	36.79	44.83
CDX95905	Canola	nucleus	56.6	43.8

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100499883	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:ACUP02006088
EMBL:BT089959	UniProt:C6SXR2	ncoils:Coil	EnsemblPlantsGene:GLYMA_10G016300	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	EnsemblPlants:KRH31847	ProteinID:KRH31847	ProteinID:KRH31847.1	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001B15417	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:1467332..1469442

Molecular Weight (calculated)

24611.5 Da

IEP (calculated)

12.009

GRAVY (calculated)

-1.088

Length

212 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKNARREER LAQGPGEKPS AAPSAPSAIA
201: SLPAQASKKS KK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.