Factsheet for Bra000887.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90946	Canola	cytosol	100.0	96.43
Bra036285.1-P	Field mustard	cytosol	92.06	87.44
AT4G02230.1	Thale cress	cytosol, mitochondrion	89.42	81.25
VIT_05s0077g01840.t01	Wine grape	cytosol	87.3	80.1
KRH69269	Soybean	nucleus	89.42	79.72
KRG96473	Soybean	nucleus	89.42	79.72
Bra030509.1-P	Field mustard	cytosol	91.53	79.36
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	87.3	79.33
KRH31849	Soybean	nucleus	88.89	79.25
KRH68219	Soybean	nucleus	88.36	78.77
KRG96400	Soybean	nucleus	88.36	78.77
KRH31847	Soybean	nucleus	88.36	78.77
KRH69268	Soybean	nucleus	87.83	78.3
KRH68137	Soybean	nucleus	87.83	78.3
Bra032586.1-P	Field mustard	cytosol, mitochondrion	83.6	78.22
HORVU4Hr1G049670.2	Barley	cytosol	84.13	77.94
EES06302	Sorghum	cytosol, mitochondrion	85.19	77.78
PGSC0003DMT400046201	Potato	mitochondrion	87.83	77.57
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	89.95	77.27
TraesCS2D01G109000.1	Wheat	golgi	85.19	77.03
TraesCS2A01G108900.1	Wheat	cytosol	85.19	77.03
Bra033346.1-P	Field mustard	cytosol	68.78	76.92
Os03t0579300-00	Rice	nucleus	83.6	76.7
Os03t0337800-01	Rice	nucleus	84.13	76.44
HORVU2Hr1G018700.1	Barley	plasma membrane	84.13	76.08
EES03157	Sorghum	cytosol, mitochondrion	83.07	75.85
TraesCS2A01G094200.1	Wheat	cytosol	84.13	75.36
TraesCS2D01G092800.1	Wheat	nucleus	84.13	74.65
EER89359	Sorghum	cytosol, mitochondrion	82.01	74.52
GSMUA_Achr1P26610_001	Banana	cytosol	71.96	71.2
TraesCS4D01G170100.1	Wheat	cytosol	84.13	69.74
Solyc09g031760.1.1	Tomato	cytosol	41.8	65.83
Bra022177.1-P	Field mustard	cytosol	69.31	62.98
TraesCS4A01G137200.1	Wheat	cytosol	74.07	61.95
Zm00001d053864_P001	Maize	cytosol	68.25	56.58
KRH76216	Soybean	cytosol, mitochondrion	80.95	45.0
TraesCS2B01G419700.1	Wheat	plastid	37.04	40.23

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EnsemblPlantsGene:Bra000887	EnsemblPlants:Bra000887.1
EnsemblPlants:Bra000887.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538
GO:GO:0022625	GO:GO:0022626	GO:GO:0030529	GO:GO:0042788	InterPro:IPR015972	UniProt:M4C9K8
HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e
InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0002540605
SEG:seg	:	:	:	:	:

Description

AT1G02780 (E=1e-073) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome

Coordinates

chrA03:+:13715349..13716296

Molecular Weight (calculated)

21960.5 Da

IEP (calculated)

11.866

GRAVY (calculated)

-0.963

Length

189 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL SASVLKCGKG KVWLDPNEGN DIAMANSRQN IRKLLNDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKARR EERLAKGPGG DVPAAAPPV

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.