Factsheet for TraesCS2D01G109000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G108900.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G126500.1	Wheat	unclear	95.69	97.09
HORVU2Hr1G018700.1	Barley	plasma membrane	96.17	96.17
Os03t0579300-00	Rice	nucleus	94.74	96.12
TraesCS2D01G092800.1	Wheat	nucleus	95.69	93.9
Zm00001d044287_P001	Maize	plasma membrane, plastid	90.43	91.3
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	89.47	91.22
EER89359	Sorghum	cytosol, mitochondrion	90.43	90.87
Zm00001d045069_P001	Maize	plasma membrane, plastid	89.95	90.38
EES06302	Sorghum	cytosol, mitochondrion	89.47	90.34
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	87.56	90.15
EES03157	Sorghum	cytosol, mitochondrion	89.0	89.86
GSMUA_Achr9P20320_001	Banana	cytosol	86.12	89.55
GSMUA_Achr3P00710_001	Banana	plasma membrane	86.6	88.29
TraesCS4D01G170100.1	Wheat	cytosol	96.17	88.16
VIT_05s0077g01840.t01	Wine grape	cytosol	86.6	87.86
KRG96400	Soybean	nucleus	88.04	86.79
KRH68219	Soybean	nucleus	88.04	86.79
KRH68137	Soybean	nucleus	87.56	86.32
CDY18029	Canola	cytosol	72.25	85.8
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	85.17	85.58
KRH31849	Soybean	nucleus	86.6	85.38
KRH69269	Soybean	nucleus	86.6	85.38
CDX90946	Canola	cytosol	79.9	85.2
Bra000887.1-P	Field mustard	cytosol	77.03	85.19
CDY52784	Canola	cytosol	80.86	84.92
Bra036285.1-P	Field mustard	cytosol	80.86	84.92
KRG96473	Soybean	nucleus	86.12	84.91
KRH69268	Soybean	nucleus	85.65	84.43
KRH31847	Soybean	nucleus	85.65	84.43
CDY22039	Canola	cytosol	80.38	84.0
Zm00001d015300_P002	Maize	cytosol, mitochondrion	88.04	83.64
AT4G02230.1	Thale cress	cytosol, mitochondrion	82.78	83.17
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	83.73	82.16
PGSC0003DMT400046201	Potato	mitochondrion	83.73	81.78
CDY65792	Canola	cytosol	83.73	81.4
CDY32478	Canola	cytosol	83.73	80.65
AT3G16780.1	Thale cress	cytosol	80.38	80.38
AT1G02780.1	Thale cress	cytosol	82.3	80.37
CDY37461	Canola	cytosol	83.25	80.18
GSMUA_Achr1P26610_001	Banana	cytosol	73.21	80.1
CDY15438	Canola	cytosol	82.78	80.09
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	84.21	80.0
CDX89944	Canola	cytosol	83.25	79.82
Bra030509.1-P	Field mustard	cytosol	83.25	79.82
Solyc09g075430.2.1	Tomato	nucleus, unclear	83.25	79.82
Bra032586.1-P	Field mustard	cytosol, mitochondrion	77.03	79.7
CDY15263	Canola	cytosol	82.3	79.26
Bra033346.1-P	Field mustard	cytosol	62.68	77.51
GSMUA_Achr1P24740_001	Banana	cytosol	53.59	71.79
VIT_17s0000g02150.t01	Wine grape	cytosol	57.89	66.12
CDY01919	Canola	endoplasmic reticulum	60.77	65.46
CDX92095	Canola	cytosol, plastid	49.28	63.98
Solyc09g031760.1.1	Tomato	cytosol	36.36	63.33
Bra022177.1-P	Field mustard	cytosol	62.68	62.98
CDY28336	Canola	cytosol, plastid	19.14	58.82
AT4G16030.1	Thale cress	cytosol, mitochondrion	28.23	51.75
KRH76216	Soybean	cytosol, mitochondrion	78.95	48.53
CDX95905	Canola	nucleus	55.5	42.34

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022625	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka
SMART:SM01416	SUPFAM:SSF48140	EnsemblPlantsGene:TraesCS2D01G109000	EnsemblPlants:TraesCS2D01G109000.1	TIGR:cd01417	SEG:seg

Description

No Description!

Coordinates

chr2D:+:60751824..60754172

Molecular Weight (calculated)

24262.1 Da

IEP (calculated)

12.002

GRAVY (calculated)

-1.062

Length

209 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL ASSVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYLKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPRDHAP APAAAAPAQA
201: AAAPKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.