Factsheet for Zm00001d044287_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

mitochondrion 4
cytosol 3

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89359	Sorghum	cytosol, mitochondrion	94.69	94.23
Os03t0337800-01	Rice	nucleus	93.72	93.27
Zm00001d045069_P001	Maize	plasma membrane, plastid	93.24	92.79
HORVU4Hr1G049670.2	Barley	cytosol	90.34	91.67
HORVU2Hr1G018700.1	Barley	plasma membrane	92.27	91.39
Os03t0579300-00	Rice	nucleus	90.82	91.26
TraesCS2B01G126500.1	Wheat	unclear	90.34	90.78
TraesCS2A01G108900.1	Wheat	cytosol	91.3	90.43
TraesCS2D01G109000.1	Wheat	golgi	91.3	90.43
TraesCS2A01G094200.1	Wheat	cytosol	91.3	89.57
TraesCS2B01G109000.1	Wheat	cytosol	91.3	89.57
TraesCS2D01G092800.1	Wheat	nucleus	91.79	89.2
Zm00001d015300_P002	Maize	cytosol, mitochondrion	92.75	87.27
TraesCS4D01G170100.1	Wheat	cytosol	92.27	83.77
Zm00001d053864_P001	Maize	cytosol	73.91	67.11

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100282430	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	UniProt:B4FL64
EMBL:BT037852	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	HAMAP:MF_01475	ProteinID:ONM40711.1	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI00017B6A8D	EnsemblPlantsGene:Zm00001d044287	EnsemblPlants:Zm00001d044287_P001	EnsemblPlants:Zm00001d044287_T001	SEG:seg

Description

Ribosomal protein L19

Coordinates

chr3:-:224227926..224230653

Molecular Weight (calculated)

24116.0 Da

IEP (calculated)

12.002

GRAVY (calculated)

-1.066

Length

207 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGKG KVWLDPNEVS EISMANSRQN IRKLVKDGFI IRKPQKVHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPREPTA PVAAPAPSTG
201: VPKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.