Factsheet for HORVU4Hr1G049670.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G018700.1	Barley	plasma membrane	97.55	95.22
Os03t0337800-01	Rice	nucleus	96.57	94.71
EES06302	Sorghum	cytosol, mitochondrion	92.65	91.3
EES03157	Sorghum	cytosol, mitochondrion	92.65	91.3
Zm00001d045069_P001	Maize	plasma membrane, plastid	92.65	90.87
EER89359	Sorghum	cytosol, mitochondrion	92.65	90.87
Zm00001d044287_P001	Maize	plasma membrane, plastid	91.67	90.34
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	89.71	89.27
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	88.24	88.67
GSMUA_Achr9P20320_001	Banana	cytosol	87.25	88.56
GSMUA_Achr3P00710_001	Banana	plasma membrane	88.73	88.29
VIT_05s0077g01840.t01	Wine grape	cytosol	86.27	85.44
KRH68137	Soybean	nucleus	88.73	85.38
KRH68219	Soybean	nucleus	88.73	85.38
KRG96473	Soybean	nucleus	88.24	84.91
KRG96400	Soybean	nucleus	88.24	84.91
CDY18029	Canola	cytosol	73.04	84.66
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	86.27	84.62
KRH69268	Soybean	nucleus	87.75	84.43
KRH31847	Soybean	nucleus	87.75	84.43
CDX90946	Canola	cytosol	80.88	84.18
Bra000887.1-P	Field mustard	cytosol	77.94	84.13
KRH31849	Soybean	nucleus	87.25	83.96
KRH69269	Soybean	nucleus	87.25	83.96
CDY52784	Canola	cytosol	81.86	83.92
Bra036285.1-P	Field mustard	cytosol	81.86	83.92
Zm00001d015300_P002	Maize	cytosol, mitochondrion	90.2	83.64
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	86.76	83.1
CDY22039	Canola	cytosol	81.37	83.0
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.33	81.73
PGSC0003DMT400046201	Potato	mitochondrion	84.31	80.37
Solyc09g075430.2.1	Tomato	nucleus, unclear	85.29	79.82
GSMUA_Achr1P26610_001	Banana	cytosol	74.51	79.58
AT1G02780.1	Thale cress	cytosol	83.33	79.44
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	85.29	79.09
AT3G16780.1	Thale cress	cytosol	80.88	78.95
CDY65792	Canola	cytosol	82.84	78.6
CDY32478	Canola	cytosol	83.33	78.34
CDY15438	Canola	cytosol	82.84	78.24
CDX89944	Canola	cytosol	83.33	77.98
CDY37461	Canola	cytosol	82.84	77.88
CDY15263	Canola	cytosol	82.84	77.88
Bra030509.1-P	Field mustard	cytosol	82.84	77.52
Bra032586.1-P	Field mustard	cytosol, mitochondrion	76.47	77.23
Bra033346.1-P	Field mustard	cytosol	62.25	75.15
GSMUA_Achr1P24740_001	Banana	cytosol	54.41	71.15
VIT_17s0000g02150.t01	Wine grape	cytosol	59.8	66.67
Solyc09g031760.1.1	Tomato	cytosol	38.73	65.83
CDX92095	Canola	cytosol, plastid	50.0	63.35
CDY01919	Canola	endoplasmic reticulum	59.8	62.89
Bra022177.1-P	Field mustard	cytosol	63.24	62.02
CDY28336	Canola	cytosol, plastid	19.12	57.35
AT4G16030.1	Thale cress	cytosol, mitochondrion	28.92	51.75
KRH76216	Soybean	cytosol, mitochondrion	80.39	48.24
CDX95905	Canola	nucleus	55.88	41.61

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:AK357558	UniProt:F2D101
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:HORVU4Hr1G049670
EnsemblPlants:HORVU4Hr1G049670.2	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI0001B636FE	SEG:seg	:	:	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:F2D101]

Coordinates

chrchr4H:-:403634462..403636621

Molecular Weight (calculated)

23884.6 Da

IEP (calculated)

11.959

GRAVY (calculated)

-1.138

Length

204 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL ASSVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IKKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYLKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPRDHSA APAQPAAAPK
201: KSKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.