CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15263	Canola	cytosol	98.62	99.08
CDY32478	Canola	cytosol	98.62	99.08
Bra030509.1-P	Field mustard	cytosol	98.62	98.62
CDY37461	Canola	cytosol	98.17	98.62
CDY65792	Canola	cytosol	96.33	97.67
CDY15438	Canola	cytosol	95.41	96.3
CDY52784	Canola	cytosol	86.7	94.97
CDY22039	Canola	cytosol	86.7	94.5
CDY18029	Canola	cytosol	74.77	92.61
CDX90946	Canola	cytosol	82.57	91.84
AT1G02780.1	Thale cress	cytosol	88.53	90.19
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	83.03	87.02
KRH68219	Soybean	nucleus	84.4	86.79
KRH68137	Soybean	nucleus	84.4	86.79
KRG96473	Soybean	nucleus	84.4	86.79
KRH31849	Soybean	nucleus	83.94	86.32
KRG96400	Soybean	nucleus	83.94	86.32
VIT_05s0077g01840.t01	Wine grape	cytosol	81.19	85.92
KRH69269	Soybean	nucleus	83.49	85.85
KRH31847	Soybean	nucleus	82.57	84.91
KRH69268	Soybean	nucleus	82.57	84.91
EES06302	Sorghum	cytosol, mitochondrion	79.82	84.06
Os03t0337800-01	Rice	nucleus	79.82	83.65
PGSC0003DMT400046201	Potato	mitochondrion	82.11	83.64
HORVU4Hr1G049670.2	Barley	cytosol	77.98	83.33
TraesCS2D01G109000.1	Wheat	golgi	79.82	83.25
TraesCS2A01G108900.1	Wheat	cytosol	79.82	83.25
HORVU2Hr1G018700.1	Barley	plasma membrane	79.36	82.78
EER89359	Sorghum	cytosol, mitochondrion	78.9	82.69
EES03157	Sorghum	cytosol, mitochondrion	78.44	82.61
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	83.03	82.27
Os03t0579300-00	Rice	nucleus	77.52	82.04
TraesCS2A01G094200.1	Wheat	cytosol	79.36	81.99
TraesCS2D01G092800.1	Wheat	nucleus	79.82	81.69
TraesCS4D01G170100.1	Wheat	cytosol	79.36	75.88
CDY01919	Canola	endoplasmic reticulum	66.06	74.23
CDX92095	Canola	cytosol, plastid	49.54	67.08
Solyc09g031760.1.1	Tomato	cytosol	36.7	66.67
TraesCS4A01G137200.1	Wheat	cytosol	65.14	62.83
CDY28336	Canola	cytosol, plastid	17.43	55.88
KRH76216	Soybean	cytosol, mitochondrion	75.69	48.53
CDX95905	Canola	nucleus	58.26	46.35

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078DN45	EnsemblPlants:CDX89944
ProteinID:CDX89944	ProteinID:CDX89944.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
EnsemblPlantsGene:GSBRNA2T00150428001	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI0001B636F3	SEG:seg	:	:	:

Description

BnaA10g01380D

Coordinates

chrLK031861:+:862538..864107

Molecular Weight (calculated)

25059.2 Da

IEP (calculated)

11.923

GRAVY (calculated)

-0.990

Length

218 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVTAPPAAAA
201: AATTTAQTAE VPKKKSKK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.