CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030509.1-P	Field mustard	cytosol	97.69	96.79
CDY32478	Canola	cytosol	96.3	95.85
CDY65792	Canola	cytosol	95.37	95.81
CDY52784	Canola	cytosol	87.96	95.48
CDX89944	Canola	cytosol	96.3	95.41
CDY37461	Canola	cytosol	95.83	95.39
CDY22039	Canola	cytosol	87.96	95.0
CDY15263	Canola	cytosol	95.37	94.93
CDY18029	Canola	cytosol	75.46	92.61
CDX90946	Canola	cytosol	83.33	91.84
AT1G02780.1	Thale cress	cytosol	87.96	88.78
VIT_05s0077g01840.t01	Wine grape	cytosol	83.33	87.38
KRH31849	Soybean	nucleus	85.19	86.79
KRH69269	Soybean	nucleus	84.72	86.32
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	82.87	86.06
KRH68137	Soybean	nucleus	83.33	84.91
KRH68219	Soybean	nucleus	83.33	84.91
EES06302	Sorghum	cytosol, mitochondrion	81.02	84.54
KRG96400	Soybean	nucleus	82.87	84.43
PGSC0003DMT400046201	Potato	mitochondrion	82.87	83.64
KRG96473	Soybean	nucleus	81.94	83.49
Os03t0337800-01	Rice	nucleus	80.09	83.17
KRH31847	Soybean	nucleus	81.48	83.02
HORVU4Hr1G049670.2	Barley	cytosol	78.24	82.84
TraesCS2A01G108900.1	Wheat	cytosol	80.09	82.78
TraesCS2D01G109000.1	Wheat	golgi	80.09	82.78
KRH69268	Soybean	nucleus	81.02	82.55
Os03t0579300-00	Rice	nucleus	78.7	82.52
HORVU2Hr1G018700.1	Barley	plasma membrane	79.63	82.3
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	83.8	82.27
EES03157	Sorghum	cytosol, mitochondrion	78.7	82.13
TraesCS2A01G094200.1	Wheat	cytosol	79.63	81.52
EER89359	Sorghum	cytosol, mitochondrion	78.24	81.25
TraesCS2D01G092800.1	Wheat	nucleus	80.09	81.22
TraesCS4D01G170100.1	Wheat	cytosol	79.17	75.0
CDY01919	Canola	endoplasmic reticulum	66.67	74.23
CDX92095	Canola	cytosol, plastid	50.0	67.08
Solyc09g031760.1.1	Tomato	cytosol	37.04	66.67
TraesCS4A01G137200.1	Wheat	cytosol	65.28	62.39
CDY28336	Canola	cytosol, plastid	17.59	55.88
KRH76216	Soybean	cytosol, mitochondrion	76.39	48.53
CDX95905	Canola	nucleus	58.8	46.35

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078FT08	UniProt:A0A078FT08
EnsemblPlants:CDY15438	ProteinID:CDY15438	ProteinID:CDY15438.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00089605001	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001B636F0	SEG:seg	:

Description

BnaA08g27220DRibosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:A0A078FT08]

Coordinates

chrLK032055:-:43722..45055

Molecular Weight (calculated)

24945.0 Da

IEP (calculated)

11.923

GRAVY (calculated)

-1.054

Length

216 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PATAPPAATT
201: PTTAQTAEVP KKKSKK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.