Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 5
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18029 | Canola | cytosol | 67.53 | 74.43 |
| CDY22039 | Canola | cytosol | 74.23 | 72.0 |
| CDY52784 | Canola | cytosol | 72.68 | 70.85 |
| CDX90946 | Canola | cytosol | 70.62 | 69.9 |
| CDY15438 | Canola | cytosol | 74.23 | 66.67 |
| CDY32478 | Canola | cytosol | 74.23 | 66.36 |
| CDX89944 | Canola | cytosol | 74.23 | 66.06 |
| CDY37461 | Canola | cytosol | 73.71 | 65.9 |
| CDY65792 | Canola | cytosol | 72.68 | 65.58 |
| CDY15263 | Canola | cytosol | 73.2 | 65.44 |
| AT4G02230.1 | Thale cress | cytosol, mitochondrion | 70.1 | 65.38 |
| KRH31849 | Soybean | nucleus | 70.1 | 64.15 |
| VIT_05s0077g01840.t01 | Wine grape | cytosol | 68.04 | 64.08 |
| KRH69269 | Soybean | nucleus | 69.59 | 63.68 |
| PGSC0003DMT400046201 | Potato | mitochondrion | 70.1 | 63.55 |
| VIT_07s0005g00840.t01 | Wine grape | cytosol, mitochondrion | 68.04 | 63.46 |
| KRH68219 | Soybean | nucleus | 69.07 | 63.21 |
| KRH68137 | Soybean | nucleus | 68.56 | 62.74 |
| PGSC0003DMT400081324 | Potato | cytosol, mitochondrion | 70.62 | 62.27 |
| KRG96473 | Soybean | nucleus | 68.04 | 62.26 |
| KRG96400 | Soybean | nucleus | 67.53 | 61.79 |
| KRH31847 | Soybean | nucleus | 67.53 | 61.79 |
| KRH69268 | Soybean | nucleus | 67.01 | 61.32 |
| Os03t0337800-01 | Rice | nucleus | 65.46 | 61.06 |
| EES06302 | Sorghum | cytosol, mitochondrion | 64.95 | 60.87 |
| TraesCS2D01G109000.1 | Wheat | golgi | 65.46 | 60.77 |
| TraesCS2A01G108900.1 | Wheat | cytosol | 65.46 | 60.77 |
| HORVU2Hr1G018700.1 | Barley | plasma membrane | 64.43 | 59.81 |
| HORVU4Hr1G049670.2 | Barley | cytosol | 62.89 | 59.8 |
| TraesCS2A01G094200.1 | Wheat | cytosol | 64.95 | 59.72 |
| Os03t0579300-00 | Rice | nucleus | 63.4 | 59.71 |
| TraesCS2D01G092800.1 | Wheat | nucleus | 65.46 | 59.62 |
| EER89359 | Sorghum | cytosol, mitochondrion | 63.92 | 59.62 |
| EES03157 | Sorghum | cytosol, mitochondrion | 63.4 | 59.42 |
| CDY28336 | Canola | cytosol, plastid | 19.59 | 55.88 |
| Solyc09g031760.1.1 | Tomato | cytosol | 34.54 | 55.83 |
| TraesCS4D01G170100.1 | Wheat | cytosol | 64.95 | 55.26 |
| TraesCS4A01G137200.1 | Wheat | cytosol | 57.22 | 49.12 |
| CDX92095 | Canola | cytosol, plastid | 40.21 | 48.45 |
| KRH76216 | Soybean | cytosol, mitochondrion | 65.46 | 37.35 |
| CDX95905 | Canola | nucleus | 46.39 | 32.85 |
Protein Annotations
| Gene3D:1.10.1200.240 | Gene3D:1.10.1650.10 | MapMan:17.1.2.1.20 | InterPro:60S_ribosomal_L19/L19e_sf | GO:A0A078EMF6 | EnsemblPlants:CDY01919 |
| ProteinID:CDY01919 | ProteinID:CDY01919.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00113132001 | InterPro:IPR015972 |
| PFAM:PF01280 | ScanProsite:PS00526 | PANTHER:PTHR10722 | PANTHER:PTHR10722:SF11 | InterPro:Ribosomal_L19/L19e | InterPro:Ribosomal_L19/L19e_CS |
| InterPro:Ribosomal_L19/L19e_dom1 | SMART:SM01416 | SUPFAM:SSF48140 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE213B |
| SEG:seg | : | : | : | : | : |
Description
BnaC02g28080D
Coordinates
chrLK031930:+:133717..136597
Molecular Weight (calculated)
23104.2 Da
IEP (calculated)
12.287
GRAVY (calculated)
-0.824
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPVSEILVW FCFFFFAHAL IKRPKRKNRV LRKRLKLQKR LAASVLKCGK GKVWLDPNEG NDISRLRQNI RKLVKDGFII RKPTKIHSRS RARRMKIAKM
101: KGRHSGYGKR KGTREARLPT KVLWMRRMRV LRRLLKKYRE SKKIDKHMYH DMYMRVKGKV FKNKRKRKHA HREERLAKGH GGDIPAAALP AQTA
101: KGRHSGYGKR KGTREARLPT KVLWMRRMRV LRRLLKKYRE SKKIDKHMYH DMYMRVKGKV FKNKRKRKHA HREERLAKGH GGDIPAAALP AQTA
001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK
Arabidopsis Description
RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.