CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03157	Sorghum	cytosol, mitochondrion	92.75	92.75
HORVU4Hr1G049670.2	Barley	cytosol	91.3	92.65
Os03t0337800-01	Rice	nucleus	92.75	92.31
EER89359	Sorghum	cytosol, mitochondrion	91.79	91.35
TraesCS2B01G126500.1	Wheat	unclear	90.82	91.26
HORVU2Hr1G018700.1	Barley	plasma membrane	91.79	90.91
Zm00001d015300_P002	Maize	cytosol, mitochondrion	96.14	90.45
Os03t0579300-00	Rice	nucleus	89.86	90.29
GSMUA_Achr7P03780_001	Banana	cytosol, mitochondrion	89.37	90.24
TraesCS2D01G109000.1	Wheat	golgi	90.34	89.47
TraesCS2A01G108900.1	Wheat	cytosol	90.34	89.47
TraesCS2B01G109000.1	Wheat	cytosol	90.82	89.1
TraesCS2A01G094200.1	Wheat	cytosol	90.82	89.1
TraesCS2D01G092800.1	Wheat	nucleus	91.3	88.73
GSMUA_Achr8P33790_001	Banana	cytosol, mitochondrion	86.96	88.67
GSMUA_Achr9P20320_001	Banana	cytosol	85.99	88.56
GSMUA_Achr3P00710_001	Banana	plasma membrane	87.44	88.29
VIT_05s0077g01840.t01	Wine grape	cytosol	87.44	87.86
CDY52784	Canola	cytosol	82.61	85.93
Bra036285.1-P	Field mustard	cytosol	82.61	85.93
CDY18029	Canola	cytosol	72.46	85.23
CDX90946	Canola	cytosol	80.68	85.2
Bra000887.1-P	Field mustard	cytosol	77.78	85.19
CDY22039	Canola	cytosol	82.13	85.0
KRH68219	Soybean	nucleus	86.96	84.91
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	85.02	84.62
KRH69268	Soybean	nucleus	86.47	84.43
KRH68137	Soybean	nucleus	86.47	84.43
KRG96400	Soybean	nucleus	86.47	84.43
KRG96473	Soybean	nucleus	86.47	84.43
KRH31847	Soybean	nucleus	86.47	84.43
KRH31849	Soybean	nucleus	86.47	84.43
KRH69269	Soybean	nucleus	85.99	83.96
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.57	83.17
PGSC0003DMT400046201	Potato	mitochondrion	85.51	82.71
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	85.02	82.63
TraesCS4D01G170100.1	Wheat	cytosol	90.82	82.46
CDY15438	Canola	cytosol	84.54	81.02
AT1G02780.1	Thale cress	cytosol	83.57	80.84
CDY65792	Canola	cytosol	83.57	80.47
GSMUA_Achr1P26610_001	Banana	cytosol	73.91	80.1
Solyc09g075430.2.1	Tomato	nucleus, unclear	84.06	79.82
Bra030509.1-P	Field mustard	cytosol	84.06	79.82
CDX89944	Canola	cytosol	84.06	79.82
CDY15263	Canola	cytosol	83.57	79.72
CDY32478	Canola	cytosol	83.57	79.72
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	84.54	79.55
AT3G16780.1	Thale cress	cytosol	80.19	79.43
Bra033346.1-P	Field mustard	cytosol	64.73	79.29
CDY37461	Canola	cytosol	83.09	79.26
Bra032586.1-P	Field mustard	cytosol, mitochondrion	76.33	78.22
GSMUA_Achr1P24740_001	Banana	cytosol	55.07	73.08
VIT_17s0000g02150.t01	Wine grape	cytosol	61.35	69.4
CDY01919	Canola	endoplasmic reticulum	60.87	64.95
Solyc09g031760.1.1	Tomato	cytosol	37.2	64.17
CDX92095	Canola	cytosol, plastid	49.76	63.98
Bra022177.1-P	Field mustard	cytosol	63.77	63.46
CDY28336	Canola	cytosol, plastid	18.84	57.35
AT4G16030.1	Thale cress	cytosol, mitochondrion	29.95	54.39
KRH76216	Soybean	cytosol, mitochondrion	79.23	48.24
CDX95905	Canola	nucleus	56.52	42.7

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EntrezGene:8076075	UniProt:C5XVB3
EnsemblPlants:EES06302	ProteinID:EES06302	ProteinID:EES06302.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR015972
HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e
InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416	EnsemblPlantsGene:SORBI_3004G045300	SUPFAM:SSF48140
UniParc:UPI0001A859FD	RefSeq:XP_002453326.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:3726646..3731394

Molecular Weight (calculated)

24050.8 Da

IEP (calculated)

11.914

GRAVY (calculated)

-1.076

Length

207 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGKG KVWLDPNEVS EISMANSRQN IRKLVKDGFI IKKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKVLWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYMKVKGN SFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKIARREER LAQGPKDITP PVSATAQATG
201: APKKAKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.