Factsheet for Solyc06g009210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g075430.2.1	Tomato	nucleus, unclear	93.43	91.28
VIT_05s0077g01840.t01	Wine grape	cytosol	87.32	90.29
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	87.79	89.9
KRG96473	Soybean	nucleus	89.2	89.62
KRH31849	Soybean	nucleus	89.2	89.62
KRH31847	Soybean	nucleus	88.26	88.68
KRH68219	Soybean	nucleus	88.26	88.68
KRH69268	Soybean	nucleus	87.79	88.21
KRH69269	Soybean	nucleus	87.32	87.74
Os03t0337800-01	Rice	nucleus	85.45	87.5
KRG96400	Soybean	nucleus	86.85	87.26
KRH68137	Soybean	nucleus	86.85	87.26
HORVU4Hr1G049670.2	Barley	cytosol	83.1	86.76
EES06302	Sorghum	cytosol, mitochondrion	82.63	85.02
EER89359	Sorghum	cytosol, mitochondrion	82.63	84.62
Os03t0579300-00	Rice	nucleus	81.69	84.47
HORVU2Hr1G018700.1	Barley	plasma membrane	82.63	84.21
EES03157	Sorghum	cytosol, mitochondrion	81.69	84.06
TraesCS2A01G108900.1	Wheat	cytosol	82.16	83.73
TraesCS2D01G109000.1	Wheat	golgi	82.16	83.73
TraesCS2D01G092800.1	Wheat	nucleus	83.1	83.1
TraesCS2A01G094200.1	Wheat	cytosol	82.16	82.94
TraesCS4D01G170100.1	Wheat	cytosol	84.04	78.51
GSMUA_Achr1P26610_001	Banana	cytosol	69.95	78.01
Solyc09g031760.1.1	Tomato	cytosol	43.66	77.5
Zm00001d053864_P001	Maize	cytosol	69.01	64.47
TraesCS4A01G137200.1	Wheat	cytosol	67.61	63.72
KRH76216	Soybean	cytosol, mitochondrion	79.81	50.0
TraesCS2B01G419700.1	Wheat	plastid	35.21	43.1

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	UniProt:K4C3V1	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	EnsemblPlantsGene:Solyc06g009210.2	EnsemblPlants:Solyc06g009210.2.1	UniParc:UPI0002766CD2	SEG:seg	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:K4C3V1]

Coordinates

chr6:+:3150991..3153904

Molecular Weight (calculated)

24718.6 Da

IEP (calculated)

12.050

GRAVY (calculated)

-1.134

Length

213 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEGN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKVLWMRRLR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME NIHKTKAEKA REKTLSDQFE ARRAKNKASR ERKFARREER LAQGPGGEKP VQPAAPAAAA
201: PAQPAQGSKK SKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.