CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69268	Soybean	nucleus	97.17	97.17
KRH31847	Soybean	nucleus	96.23	96.23
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	91.98	93.75
KRH68219	Soybean	nucleus	93.4	93.4
KRG96400	Soybean	nucleus	90.57	90.57
KRH31849	Soybean	nucleus	89.62	89.62
Bra000887.1-P	Field mustard	cytosol	79.72	89.42
CDX90946	Canola	cytosol	82.55	89.29
CDY18029	Canola	cytosol	74.06	89.2
Solyc06g009210.2.1	Tomato	nucleus, plastid, unclear	89.62	89.2
KRH69269	Soybean	nucleus	89.15	89.15
KRH68137	Soybean	nucleus	89.15	89.15
Os03t0337800-01	Rice	nucleus	86.79	88.46
HORVU4Hr1G049670.2	Barley	cytosol	84.91	88.24
CDY52784	Canola	cytosol	82.55	87.94
Bra036285.1-P	Field mustard	cytosol	82.55	87.94
HORVU2Hr1G018700.1	Barley	plasma membrane	86.32	87.56
CDY22039	Canola	cytosol	82.55	87.5
Solyc09g075430.2.1	Tomato	nucleus, unclear	89.62	87.16
EER89359	Sorghum	cytosol, mitochondrion	85.38	87.02
EES03157	Sorghum	cytosol, mitochondrion	84.43	86.47
EES06302	Sorghum	cytosol, mitochondrion	84.43	86.47
Os03t0579300-00	Rice	nucleus	83.96	86.41
TraesCS2A01G108900.1	Wheat	cytosol	84.91	86.12
TraesCS2D01G109000.1	Wheat	golgi	84.91	86.12
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	89.15	85.91
TraesCS2A01G094200.1	Wheat	cytosol	85.38	85.78
PGSC0003DMT400046201	Potato	mitochondrion	86.32	85.51
AT1G02780.1	Thale cress	cytosol	86.32	85.51
TraesCS2D01G092800.1	Wheat	nucleus	85.85	85.45
AT3G16780.1	Thale cress	cytosol	83.49	84.69
AT4G02230.1	Thale cress	cytosol, mitochondrion	83.02	84.62
CDX89944	Canola	cytosol	86.79	84.4
CDY32478	Canola	cytosol	86.32	84.33
CDY15263	Canola	cytosol	86.32	84.33
CDY65792	Canola	cytosol	85.38	84.19
CDY37461	Canola	cytosol	85.85	83.87
Bra032586.1-P	Field mustard	cytosol, mitochondrion	79.72	83.66
Bra030509.1-P	Field mustard	cytosol	85.38	83.03
CDY15438	Canola	cytosol	83.49	81.94
Bra033346.1-P	Field mustard	cytosol	63.68	79.88
GSMUA_Achr1P26610_001	Banana	cytosol	71.7	79.58
TraesCS4D01G170100.1	Wheat	cytosol	85.38	79.39
Solyc09g031760.1.1	Tomato	cytosol	41.04	72.5
CDY01919	Canola	endoplasmic reticulum	62.26	68.04
CDX92095	Canola	cytosol, plastid	51.42	67.7
Bra022177.1-P	Field mustard	cytosol	64.62	65.87
TraesCS4A01G137200.1	Wheat	cytosol	69.81	65.49
Zm00001d053864_P001	Maize	cytosol	67.45	62.72
CDY28336	Canola	cytosol, plastid	18.87	58.82
KRH76216	Soybean	cytosol, mitochondrion	81.6	50.88
TraesCS2B01G419700.1	Wheat	plastid	36.32	44.25
CDX95905	Canola	nucleus	56.6	43.8

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100527501	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EMBL:ACUP02012155
EMBL:BT092348	UniProt:C6T4I7	EnsemblPlantsGene:GLYMA_19G213200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:IPR015972
EnsemblPlants:KRG96473	ProteinID:KRG96473	ProteinID:KRG96473.1	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka
SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001B159D3	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:46662585..46664599

Molecular Weight (calculated)

24629.6 Da

IEP (calculated)

12.009

GRAVY (calculated)

-1.081

Length

212 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKIARREER LAQGPGEKVS AAPSATAATA
201: SQPAQAPKKS KK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.