Factsheet for PGSC0003DMT400046201

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 4
cytosol 4
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31849	Soybean	nucleus	89.72	90.57
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	92.99	90.45
KRH69269	Soybean	nucleus	88.78	89.62
CDY18029	Canola	cytosol	73.36	89.2
VIT_05s0077g01840.t01	Wine grape	cytosol	85.51	88.83
CDY52784	Canola	cytosol	82.24	88.44
KRH68219	Soybean	nucleus	87.38	88.21
CDY22039	Canola	cytosol	82.24	88.0
Bra036285.1-P	Field mustard	cytosol	81.78	87.94
Bra000887.1-P	Field mustard	cytosol	77.57	87.83
CDX90946	Canola	cytosol	80.37	87.76
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	85.05	87.5
KRG96400	Soybean	nucleus	85.98	86.79
KRH68137	Soybean	nucleus	85.51	86.32
KRG96473	Soybean	nucleus	85.51	86.32
KRH31847	Soybean	nucleus	85.05	85.85
EES06302	Sorghum	cytosol, mitochondrion	82.71	85.51
KRH69268	Soybean	nucleus	84.58	85.38
AT4G02230.1	Thale cress	cytosol, mitochondrion	82.71	85.1
HORVU4Hr1G049670.2	Barley	cytosol	80.37	84.31
Os03t0579300-00	Rice	nucleus	80.84	83.98
TraesCS2D01G109000.1	Wheat	golgi	81.78	83.73
TraesCS2A01G108900.1	Wheat	cytosol	81.78	83.73
Os03t0337800-01	Rice	nucleus	81.31	83.65
EER89359	Sorghum	cytosol, mitochondrion	81.31	83.65
AT1G02780.1	Thale cress	cytosol	83.64	83.64
EES03157	Sorghum	cytosol, mitochondrion	80.37	83.09
CDY15438	Canola	cytosol	83.64	82.87
AT3G16780.1	Thale cress	cytosol	80.84	82.78
HORVU2Hr1G018700.1	Barley	plasma membrane	80.84	82.78
CDY65792	Canola	cytosol	82.71	82.33
CDX89944	Canola	cytosol	83.64	82.11
Bra030509.1-P	Field mustard	cytosol	83.64	82.11
CDY32478	Canola	cytosol	83.18	82.03
TraesCS2D01G092800.1	Wheat	nucleus	81.31	81.69
Bra033346.1-P	Field mustard	cytosol	64.49	81.66
CDY37461	Canola	cytosol	82.71	81.57
CDY15263	Canola	cytosol	82.71	81.57
TraesCS2A01G094200.1	Wheat	cytosol	80.37	81.52
Bra032586.1-P	Field mustard	cytosol, mitochondrion	76.64	81.19
GSMUA_Achr1P26610_001	Banana	cytosol	69.63	78.01
TraesCS4D01G170100.1	Wheat	cytosol	80.37	75.44
CDY01919	Canola	endoplasmic reticulum	63.55	70.1
CDX92095	Canola	cytosol, plastid	50.47	67.08
Bra022177.1-P	Field mustard	cytosol	63.55	65.38
Zm00001d053864_P001	Maize	cytosol	67.76	63.6
TraesCS4A01G137200.1	Wheat	cytosol	66.82	63.27
KRH76216	Soybean	cytosol, mitochondrion	79.91	50.29
CDX95905	Canola	nucleus	57.01	44.53
TraesCS2B01G419700.1	Wheat	plastid	35.05	43.1

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:102577496	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	ProteinID:ABC01909
ProteinID:ABC01909.1	EMBL:DQ294277	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	InterPro:IPR015972	UniProt:M1BIS3	HAMAP:MF_01475	PFAM:PF01280	EnsemblPlantsGene:PGSC0003DMG400017933
PGSC:PGSC0003DMG400017933	EnsemblPlants:PGSC0003DMT400046201	ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e
InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0002951AF3
RefSeq:XP_006355818.1	SEG:seg	:	:	:	:

Description

Ribosomal protein L19 [Source:PGSC_GENE;Acc:PGSC0003DMG400017933]

Coordinates

chr6:-:400168..403041

Molecular Weight (calculated)

24819.7 Da

IEP (calculated)

12.050

GRAVY (calculated)

-1.133

Length

214 amino acids

Sequence
(BLAST)

001: MVSLKLQKRL AASVLKCGRG KVWLDPNEGS EISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK RKGTREARLP TKVLWMRRLR
101: VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME NIHKTKAEKA REKTLSDQFE ARRAKNKASR ERKFARREER LAQGPGGEKP VQQPAAPAAA
201: APAQPAQGSK KSKK

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.