Factsheet for Bra033346.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036285.1-P	Field mustard	cytosol	84.02	71.36
AT1G02780.1	Thale cress	cytosol	88.17	69.63
Bra000887.1-P	Field mustard	cytosol	76.92	68.78
Bra030509.1-P	Field mustard	cytosol	86.39	66.97
VIT_05s0077g01840.t01	Wine grape	cytosol	79.29	65.05
Bra032586.1-P	Field mustard	cytosol, mitochondrion	77.51	64.85
EES06302	Sorghum	cytosol, mitochondrion	79.29	64.73
KRH68219	Soybean	nucleus	81.07	64.62
PGSC0003DMT400046201	Potato	mitochondrion	81.66	64.49
KRH31849	Soybean	nucleus	80.47	64.15
KRH69269	Soybean	nucleus	79.88	63.68
KRG96473	Soybean	nucleus	79.88	63.68
KRH68137	Soybean	nucleus	79.29	63.21
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	77.51	62.98
Os03t0337800-01	Rice	nucleus	77.51	62.98
KRH69268	Soybean	nucleus	78.7	62.74
KRG96400	Soybean	nucleus	78.7	62.74
KRH31847	Soybean	nucleus	78.7	62.74
TraesCS2D01G109000.1	Wheat	golgi	77.51	62.68
TraesCS2A01G108900.1	Wheat	cytosol	77.51	62.68
Os03t0579300-00	Rice	nucleus	76.33	62.62
EER89359	Sorghum	cytosol, mitochondrion	76.92	62.5
EES03157	Sorghum	cytosol, mitochondrion	76.33	62.32
HORVU4Hr1G049670.2	Barley	cytosol	75.15	62.25
TraesCS2A01G094200.1	Wheat	cytosol	77.51	62.09
HORVU2Hr1G018700.1	Barley	plasma membrane	76.33	61.72
TraesCS2D01G092800.1	Wheat	nucleus	77.51	61.5
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	79.88	61.36
TraesCS4D01G170100.1	Wheat	cytosol	76.92	57.02
Solyc09g031760.1.1	Tomato	cytosol	39.65	55.83
GSMUA_Achr1P26610_001	Banana	cytosol	60.95	53.93
Bra022177.1-P	Field mustard	cytosol	66.27	53.85
TraesCS4A01G137200.1	Wheat	cytosol	60.95	45.58
Zm00001d053864_P001	Maize	cytosol	60.35	44.74
KRH76216	Soybean	cytosol, mitochondrion	72.19	35.88
TraesCS2B01G419700.1	Wheat	plastid	23.67	22.99

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EnsemblPlantsGene:Bra033346	EnsemblPlants:Bra033346.1
EnsemblPlants:Bra033346.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR015972	UniProt:M4EX11
PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS
InterPro:Ribosomal_L19/L19e_dom1	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0002544DA1	SEG:seg	:

Description

AT1G02780 (E=1e-045) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome

Coordinates

chrA10:+:4128562..4129732

Molecular Weight (calculated)

19427.9 Da

IEP (calculated)

11.444

GRAVY (calculated)

-0.927

Length

169 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESS DISMANSRKR KGTREARFPT KVLWMRRMRV LRRLLEKYRE SKKIYKHMYH DMYMRVKGNV FKNKRVLMES
101: IHKSKAEKAR EKNLSDQFEA KRAKNKASRE RKHARREERL AKGPGGDVAP VTAPPAAAAA ATTTAQTAE

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.