Factsheet for Bra030509.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89944	Canola	cytosol	98.62	98.62
Bra032586.1-P	Field mustard	cytosol, mitochondrion	91.28	98.51
CDY15438	Canola	cytosol	96.79	97.69
Bra036285.1-P	Field mustard	cytosol	87.16	95.48
Bra000887.1-P	Field mustard	cytosol	79.36	91.53
AT1G02780.1	Thale cress	cytosol	87.61	89.25
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	83.03	87.02
VIT_05s0077g01840.t01	Wine grape	cytosol	81.65	86.41
Bra033346.1-P	Field mustard	cytosol	66.97	86.39
KRH68137	Soybean	nucleus	83.94	86.32
KRH31849	Soybean	nucleus	83.94	86.32
KRH68219	Soybean	nucleus	83.49	85.85
KRH69269	Soybean	nucleus	83.49	85.85
KRG96400	Soybean	nucleus	83.49	85.85
KRG96473	Soybean	nucleus	83.03	85.38
KRH31847	Soybean	nucleus	82.11	84.43
KRH69268	Soybean	nucleus	82.11	84.43
EES06302	Sorghum	cytosol, mitochondrion	79.82	84.06
Os03t0337800-01	Rice	nucleus	79.82	83.65
PGSC0003DMT400046201	Potato	mitochondrion	82.11	83.64
TraesCS2D01G109000.1	Wheat	golgi	79.82	83.25
TraesCS2A01G108900.1	Wheat	cytosol	79.82	83.25
HORVU4Hr1G049670.2	Barley	cytosol	77.52	82.84
HORVU2Hr1G018700.1	Barley	plasma membrane	79.36	82.78
EER89359	Sorghum	cytosol, mitochondrion	78.9	82.69
EES03157	Sorghum	cytosol, mitochondrion	78.44	82.61
Os03t0579300-00	Rice	nucleus	77.98	82.52
TraesCS2A01G094200.1	Wheat	cytosol	79.36	81.99
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	82.57	81.82
TraesCS2D01G092800.1	Wheat	nucleus	79.82	81.69
GSMUA_Achr1P26610_001	Banana	cytosol	67.89	77.49
TraesCS4D01G170100.1	Wheat	cytosol	78.9	75.44
Bra022177.1-P	Field mustard	cytosol	64.68	67.79
Solyc09g031760.1.1	Tomato	cytosol	36.7	66.67
Zm00001d053864_P001	Maize	cytosol	66.06	63.16
TraesCS4A01G137200.1	Wheat	cytosol	65.14	62.83
KRH76216	Soybean	cytosol, mitochondrion	75.69	48.53
TraesCS2B01G419700.1	Wheat	plastid	32.57	40.8

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	EnsemblPlantsGene:Bra030509	EnsemblPlants:Bra030509.1
EnsemblPlants:Bra030509.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	UniProt:M4ENY9	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka	SMART:SM01416
SUPFAM:SSF48140	UniParc:UPI0002545C85	SEG:seg	:	:	:

Description

AT1G02780 (E=5e-094) emb2386 | emb2386 (embryo defective 2386); structural constituent of ribosome

Coordinates

chrA08:+:21517255..21518296

Molecular Weight (calculated)

25091.2 Da

IEP (calculated)

11.923

GRAVY (calculated)

-1.024

Length

218 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PATAPPAAAA
201: TTTTTAQTAE VPKKKSKK

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.