Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G018700.1 | Barley | plasma membrane | 97.65 | 99.52 |
| TraesCS2B01G109000.1 | Wheat | cytosol | 97.65 | 98.58 |
| TraesCS2A01G094200.1 | Wheat | cytosol | 97.65 | 98.58 |
| TraesCS2D01G109000.1 | Wheat | golgi | 93.9 | 95.69 |
| EER89359 | Sorghum | cytosol, mitochondrion | 91.08 | 93.27 |
| Os03t0579300-00 | Rice | nucleus | 89.67 | 92.72 |
| Zm00001d045069_P001 | Maize | plasma membrane, plastid | 90.14 | 92.31 |
| EES03157 | Sorghum | cytosol, mitochondrion | 89.67 | 92.27 |
| Zm00001d044287_P001 | Maize | plasma membrane, plastid | 89.2 | 91.79 |
| EES06302 | Sorghum | cytosol, mitochondrion | 88.73 | 91.3 |
| GSMUA_Achr7P03780_001 | Banana | cytosol, mitochondrion | 86.39 | 89.76 |
| GSMUA_Achr9P20320_001 | Banana | cytosol | 84.51 | 89.55 |
| GSMUA_Achr3P00710_001 | Banana | plasma membrane | 85.92 | 89.27 |
| VIT_05s0077g01840.t01 | Wine grape | cytosol | 85.45 | 88.35 |
| GSMUA_Achr8P33790_001 | Banana | cytosol, mitochondrion | 84.04 | 88.18 |
| TraesCS4D01G170100.1 | Wheat | cytosol | 93.9 | 87.72 |
| KRH68219 | Soybean | nucleus | 86.85 | 87.26 |
| VIT_07s0005g00840.t01 | Wine grape | cytosol, mitochondrion | 84.51 | 86.54 |
| KRH68137 | Soybean | nucleus | 85.45 | 85.85 |
| KRG96473 | Soybean | nucleus | 85.45 | 85.85 |
| KRH31847 | Soybean | nucleus | 85.45 | 85.85 |
| KRH69268 | Soybean | nucleus | 84.98 | 85.38 |
| KRG96400 | Soybean | nucleus | 84.98 | 85.38 |
| CDY18029 | Canola | cytosol | 70.42 | 85.23 |
| CDY52784 | Canola | cytosol | 79.34 | 84.92 |
| Bra036285.1-P | Field mustard | cytosol | 79.34 | 84.92 |
| CDX90946 | Canola | cytosol | 77.93 | 84.69 |
| Zm00001d015300_P002 | Maize | cytosol, mitochondrion | 87.32 | 84.55 |
| KRH31849 | Soybean | nucleus | 84.04 | 84.43 |
| KRH69269 | Soybean | nucleus | 84.04 | 84.43 |
| Bra000887.1-P | Field mustard | cytosol | 74.65 | 84.13 |
| CDY22039 | Canola | cytosol | 78.87 | 84.0 |
| AT4G02230.1 | Thale cress | cytosol, mitochondrion | 81.22 | 83.17 |
| Solyc06g009210.2.1 | Tomato | nucleus, plastid, unclear | 83.1 | 83.1 |
| AT1G02780.1 | Thale cress | cytosol | 82.16 | 81.78 |
| Solyc09g075430.2.1 | Tomato | nucleus, unclear | 83.57 | 81.65 |
| PGSC0003DMT400046201 | Potato | mitochondrion | 81.69 | 81.31 |
| CDY65792 | Canola | cytosol | 81.69 | 80.93 |
| AT3G16780.1 | Thale cress | cytosol | 79.34 | 80.86 |
| CDY32478 | Canola | cytosol | 82.16 | 80.65 |
| CDY37461 | Canola | cytosol | 81.69 | 80.18 |
| GSMUA_Achr1P26610_001 | Banana | cytosol | 71.83 | 80.1 |
| CDY15438 | Canola | cytosol | 81.22 | 80.09 |
| Bra030509.1-P | Field mustard | cytosol | 81.69 | 79.82 |
| CDX89944 | Canola | cytosol | 81.69 | 79.82 |
| CDY15263 | Canola | cytosol | 81.22 | 79.72 |
| Bra032586.1-P | Field mustard | cytosol, mitochondrion | 75.59 | 79.7 |
| PGSC0003DMT400081324 | Potato | cytosol, mitochondrion | 81.69 | 79.09 |
| Bra033346.1-P | Field mustard | cytosol | 61.5 | 77.51 |
| GSMUA_Achr1P24740_001 | Banana | cytosol | 52.58 | 71.79 |
| VIT_17s0000g02150.t01 | Wine grape | cytosol | 56.81 | 66.12 |
| CDY01919 | Canola | endoplasmic reticulum | 59.62 | 65.46 |
| Solyc09g031760.1.1 | Tomato | cytosol | 36.15 | 64.17 |
| CDX92095 | Canola | cytosol, plastid | 47.89 | 63.35 |
| Bra022177.1-P | Field mustard | cytosol | 61.03 | 62.5 |
| CDY28336 | Canola | cytosol, plastid | 18.78 | 58.82 |
| AT4G16030.1 | Thale cress | cytosol, mitochondrion | 28.17 | 52.63 |
| KRH76216 | Soybean | cytosol, mitochondrion | 77.93 | 48.82 |
| CDX95905 | Canola | nucleus | 53.99 | 41.97 |
Protein Annotations
| Gene3D:1.10.1200.240 | Gene3D:1.10.1650.10 | MapMan:17.1.2.1.20 | InterPro:60S_ribosomal_L19/L19e_sf | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR015972 | HAMAP:MF_01475 | PFAM:PF01280 | ScanProsite:PS00526 |
| PANTHER:PTHR10722 | PANTHER:PTHR10722:SF11 | InterPro:Ribosomal_L19/L19e | InterPro:Ribosomal_L19/L19e_CS | InterPro:Ribosomal_L19/L19e_dom1 | InterPro:Ribosomal_L19_euka |
| SMART:SM01416 | SUPFAM:SSF48140 | EnsemblPlantsGene:TraesCS2D01G092800 | EnsemblPlants:TraesCS2D01G092800.1 | TIGR:cd01417 | SEG:seg |
Description
No Description!
Coordinates
chr2D:-:44086861..44089170
Molecular Weight (calculated)
24622.5 Da
IEP (calculated)
12.006
GRAVY (calculated)
-1.078
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLKLQKRL ASSVLKCGKG KVWLDPNEVN EISMANSRQN IRKLVKDGFI IRKPQKIHSR SRARRAHEAK QKGRHSGYGK RRGTREARLP TKILWMRRMR
101: VLRRLLRKYR EAKKIDKHMY HDMYLKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKHARREER LAQGPRDHAP APAAAAPAPA
201: PAAAAPKKAK AKK
101: VLRRLLRKYR EAKKIDKHMY HDMYLKVKGN MFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKSKASR ERKHARREER LAQGPRDHAP APAAAAPAPA
201: PAAAAPKKAK AKK
001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK
Arabidopsis Description
RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.