CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92095	Canola	cytosol, plastid	52.94	22.36
GSMUA_Achr1P26610_001	Banana	cytosol	60.29	21.47
CDY18029	Canola	cytosol	54.41	21.02
CDY01919	Canola	endoplasmic reticulum	55.88	19.59
VIT_05s0077g01840.t01	Wine grape	cytosol	58.82	19.42
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	58.82	19.23
TraesCS2D01G109000.1	Wheat	golgi	58.82	19.14
TraesCS2A01G108900.1	Wheat	cytosol	58.82	19.14
HORVU2Hr1G018700.1	Barley	plasma membrane	58.82	19.14
HORVU4Hr1G049670.2	Barley	cytosol	57.35	19.12
CDY52784	Canola	cytosol	55.88	19.1
CDY22039	Canola	cytosol	55.88	19.0
TraesCS2A01G094200.1	Wheat	cytosol	58.82	18.96
Os03t0579300-00	Rice	nucleus	57.35	18.93
CDX90946	Canola	cytosol	54.41	18.88
KRH68219	Soybean	nucleus	58.82	18.87
KRH69268	Soybean	nucleus	58.82	18.87
KRH69269	Soybean	nucleus	58.82	18.87
KRG96473	Soybean	nucleus	58.82	18.87
KRH31849	Soybean	nucleus	58.82	18.87
KRH31847	Soybean	nucleus	58.82	18.87
KRG96400	Soybean	nucleus	58.82	18.87
EES06302	Sorghum	cytosol, mitochondrion	57.35	18.84
EES03157	Sorghum	cytosol, mitochondrion	57.35	18.84
TraesCS2D01G092800.1	Wheat	nucleus	58.82	18.78
EER89359	Sorghum	cytosol, mitochondrion	57.35	18.75
Os03t0337800-01	Rice	nucleus	57.35	18.75
KRH68137	Soybean	nucleus	57.35	18.4
TraesCS2B01G419700.1	Wheat	plastid	47.06	18.39
CDY65792	Canola	cytosol	55.88	17.67
CDY15438	Canola	cytosol	55.88	17.59
CDY32478	Canola	cytosol	55.88	17.51
CDX89944	Canola	cytosol	55.88	17.43
TraesCS4A01G137200.1	Wheat	cytosol	57.35	17.26
Zm00001d053864_P001	Maize	cytosol	57.35	17.11
TraesCS4D01G170100.1	Wheat	cytosol	57.35	17.11
CDY37461	Canola	cytosol	54.41	17.05
CDY15263	Canola	cytosol	54.41	17.05
KRH76216	Soybean	cytosol, mitochondrion	54.41	10.88
CDX95905	Canola	nucleus	32.35	8.03

Protein Annotations

Gene3D:1.10.1200.240	MapMan:35.2	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078GS39	UniProt:A0A078GS39	EnsemblPlants:CDY28336
ProteinID:CDY28336	ProteinID:CDY28336.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00040115001	PFAM:PF01280
PANTHER:PTHR10722	PANTHER:PTHR10722:SF6	InterPro:Ribosomal_L19/L19e	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0004EEDDA9

Description

BnaC01g35060DBnaC01g35060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GS39]

Coordinates

chrLK032218:-:829..1124

Molecular Weight (calculated)

8142.0 Da

IEP (calculated)

12.398

GRAVY (calculated)

-0.999

Length

68 amino acids

Sequence
(BLAST)

1: MKDGFTIRKP SRIHSRACAR SSNEAKRKGC HSGYGKRRTK VLLWIRRTRV SRRFLSKFLE TNRIERHI

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.