CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036285.1-P	Field mustard	cytosol	99.5	99.5
CDY22039	Canola	cytosol	99.0	98.5
CDY18029	Canola	cytosol	82.41	93.18
CDX90946	Canola	cytosol	90.95	92.35
CDY15438	Canola	cytosol	95.48	87.96
CDY32478	Canola	cytosol	94.97	87.1
CDY65792	Canola	cytosol	93.97	86.98
CDX89944	Canola	cytosol	94.97	86.7
CDY37461	Canola	cytosol	94.47	86.64
AT1G02780.1	Thale cress	cytosol	92.96	86.45
CDY15263	Canola	cytosol	93.97	86.18
VIT_05s0077g01840.t01	Wine grape	cytosol	88.44	85.44
KRH31849	Soybean	nucleus	89.95	84.43
KRH69269	Soybean	nucleus	89.45	83.96
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	87.44	83.65
KRH68137	Soybean	nucleus	88.94	83.49
KRH68219	Soybean	nucleus	88.44	83.02
EES06302	Sorghum	cytosol, mitochondrion	85.93	82.61
KRG96400	Soybean	nucleus	87.94	82.55
KRG96473	Soybean	nucleus	87.94	82.55
PGSC0003DMT400046201	Potato	mitochondrion	88.44	82.24
KRH31847	Soybean	nucleus	87.44	82.08
HORVU4Hr1G049670.2	Barley	cytosol	83.92	81.86
Os03t0337800-01	Rice	nucleus	85.43	81.73
KRH69268	Soybean	nucleus	86.93	81.6
TraesCS2A01G108900.1	Wheat	cytosol	84.92	80.86
TraesCS2D01G109000.1	Wheat	golgi	84.92	80.86
Os03t0579300-00	Rice	nucleus	83.42	80.58
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	88.94	80.45
HORVU2Hr1G018700.1	Barley	plasma membrane	84.42	80.38
TraesCS2A01G094200.1	Wheat	cytosol	84.92	80.09
EES03157	Sorghum	cytosol, mitochondrion	82.91	79.71
TraesCS2D01G092800.1	Wheat	nucleus	84.92	79.34
EER89359	Sorghum	cytosol, mitochondrion	82.91	79.33
TraesCS4D01G170100.1	Wheat	cytosol	84.92	74.12
CDY01919	Canola	endoplasmic reticulum	70.85	72.68
CDX92095	Canola	cytosol, plastid	54.27	67.08
Solyc09g031760.1.1	Tomato	cytosol	40.2	66.67
TraesCS4A01G137200.1	Wheat	cytosol	71.86	63.27
CDY28336	Canola	cytosol, plastid	19.1	55.88
KRH76216	Soybean	cytosol, mitochondrion	80.9	47.35
CDX95905	Canola	nucleus	63.82	46.35

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078ITM4	UniProt:A0A078ITM4
EnsemblPlants:CDY52784	ProteinID:CDY52784	ProteinID:CDY52784.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00007841001	InterPro:IPR015972	HAMAP:MF_01475	PFAM:PF01280
ScanProsite:PS00526	PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1
InterPro:Ribosomal_L19_euka	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0004EED65E	SEG:seg	:

Description

BnaCnng23290DRibosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:A0A078ITM4]

Coordinates

chrLK033130:+:55512..57296

Molecular Weight (calculated)

23211.0 Da

IEP (calculated)

11.969

GRAVY (calculated)

-1.043

Length

199 amino acids

Sequence
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESH DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDIP AAAPPARTA

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.