CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022177.1-P	Field mustard	cytosol	88.82	68.75
Solyc09g031760.1.1	Tomato	cytosol	41.61	55.83
CDX90946	Canola	cytosol	67.08	55.1
CDY22039	Canola	cytosol	67.7	54.5
CDY52784	Canola	cytosol	67.08	54.27
CDY28336	Canola	cytosol, plastid	22.36	52.94
VIT_05s0077g01840.t01	Wine grape	cytosol	67.7	52.91
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	67.7	52.4
KRH31849	Soybean	nucleus	68.94	52.36
KRH69269	Soybean	nucleus	68.32	51.89
CDY18029	Canola	cytosol	56.52	51.7
KRH69268	Soybean	nucleus	67.7	51.42
KRH68219	Soybean	nucleus	67.7	51.42
KRH31847	Soybean	nucleus	67.7	51.42
KRG96473	Soybean	nucleus	67.7	51.42
KRH68137	Soybean	nucleus	67.08	50.94
KRG96400	Soybean	nucleus	67.08	50.94
PGSC0003DMT400046201	Potato	mitochondrion	67.08	50.47
CDY65792	Canola	cytosol	67.08	50.23
CDY15438	Canola	cytosol	67.08	50.0
HORVU4Hr1G049670.2	Barley	cytosol	63.35	50.0
CDY37461	Canola	cytosol	67.08	49.77
CDY32478	Canola	cytosol	67.08	49.77
EES06302	Sorghum	cytosol, mitochondrion	63.98	49.76
CDX89944	Canola	cytosol	67.08	49.54
AT1G02780.1	Thale cress	cytosol	65.84	49.53
Os03t0337800-01	Rice	nucleus	63.98	49.52
Os03t0579300-00	Rice	nucleus	63.35	49.51
CDY15263	Canola	cytosol	66.46	49.31
TraesCS2A01G108900.1	Wheat	cytosol	63.98	49.28
TraesCS2D01G109000.1	Wheat	golgi	63.98	49.28
EES03157	Sorghum	cytosol, mitochondrion	63.35	49.28
EER89359	Sorghum	cytosol, mitochondrion	63.35	49.04
HORVU2Hr1G018700.1	Barley	plasma membrane	63.35	48.8
PGSC0003DMT400081324	Potato	cytosol, mitochondrion	66.46	48.64
TraesCS2A01G094200.1	Wheat	cytosol	63.35	48.34
TraesCS2D01G092800.1	Wheat	nucleus	63.35	47.89
TraesCS4D01G170100.1	Wheat	cytosol	63.35	44.74
CDY01919	Canola	endoplasmic reticulum	48.45	40.21
TraesCS4A01G137200.1	Wheat	cytosol	54.04	38.5
CDX95905	Canola	nucleus	65.22	38.32
KRH76216	Soybean	cytosol, mitochondrion	60.87	28.82

Protein Annotations

Gene3D:1.10.1200.240	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf	GO:A0A078DS40	EnsemblPlants:CDX92095	ProteinID:CDX92095
ProteinID:CDX92095.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00153783001	PFAM:PF01280	PANTHER:PTHR10722
PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0004EDD8B4	SEG:seg

Description

BnaA05g23120D

Coordinates

chrLK031871:+:148667..154552

Molecular Weight (calculated)

19033.7 Da

IEP (calculated)

11.759

GRAVY (calculated)

-0.932

Length

161 amino acids

Sequence
(BLAST)

001: MLGRIQIHYL PFLDLKLSKI HSRAHARTLN EAKRKGRHSG SGKRKGTREA RQPTKFLWMN RMRVLRRFLL NYREKNKIDK HMYHEMYMKV KGGVFKNKCV
101: LMESIHKYTV EKAREKTLSD QFETKRVKNK ASRERKLARK LARREKRLAR GAGGGEIAVV S

Best Arabidopsis Sequence Match ( AT1G02780.1 )
(BLAST)

001: MVSLKLQKRL AASVMKCGKG KVWLDPNESS DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARKMKIAK MKGRHSGYGK RKGTREARLP TKVLWMRRMR
101: VLRRLLKKYR ETKKIDKHMY HDMYMRVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE AKRAKNKASR ERKHARREER LAKGPGGDVA PVAAPAPAAT
201: PAPTAAVPKK KSKK

Arabidopsis Description

RPL19A60S ribosomal protein L19-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRX2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.