Factsheet for VIT_17s0000g02150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
vacuole 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P24740_001	Banana	cytosol	55.19	64.74
EES06302	Sorghum	cytosol, mitochondrion	69.4	61.35
VIT_07s0005g00840.t01	Wine grape	cytosol, mitochondrion	68.85	60.58
VIT_05s0077g01840.t01	Wine grape	cytosol	67.76	60.19
EES03157	Sorghum	cytosol, mitochondrion	67.76	59.9
HORVU4Hr1G049670.2	Barley	cytosol	66.67	59.8
Os03t0579300-00	Rice	nucleus	67.21	59.71
EER89359	Sorghum	cytosol, mitochondrion	67.76	59.62
Os03t0337800-01	Rice	nucleus	67.76	59.62
HORVU2Hr1G018700.1	Barley	plasma membrane	66.12	57.89
TraesCS2A01G108900.1	Wheat	cytosol	66.12	57.89
TraesCS2D01G109000.1	Wheat	golgi	66.12	57.89
TraesCS2A01G094200.1	Wheat	cytosol	66.12	57.35
TraesCS2D01G092800.1	Wheat	nucleus	66.12	56.81
TraesCS4D01G170100.1	Wheat	cytosol	66.12	53.07
TraesCS4A01G137200.1	Wheat	cytosol	60.66	49.12

Protein Annotations

Gene3D:1.10.1200.240	Gene3D:1.10.1650.10	EntrezGene:100267867	wikigene:100267867	MapMan:17.1.2.1.20	InterPro:60S_ribosomal_L19/L19e_sf
ProteinID:CBI15595	ProteinID:CBI15595.3	UniProt:D7SJD4	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:IPR015972	EntrezGene:LOC100267867	wikigene:LOC100267867	HAMAP:MF_01475	PFAM:PF01280	ScanProsite:PS00526
PANTHER:PTHR10722	PANTHER:PTHR10722:SF11	InterPro:Ribosomal_L19/L19e	InterPro:Ribosomal_L19/L19e_CS	InterPro:Ribosomal_L19/L19e_dom1	InterPro:Ribosomal_L19_euka
SMART:SM01416	SUPFAM:SSF48140	UniParc:UPI0001BE0B0B	ArrayExpress:VIT_17s0000g02150	EnsemblPlantsGene:VIT_17s0000g02150	EnsemblPlants:VIT_17s0000g02150.t01
RefSeq:XP_002278946	RefSeq:XP_002278946.1	SEG:seg	:	:	:

Description

Ribosomal protein L19 [Source:UniProtKB/TrEMBL;Acc:D7SJD4]

Coordinates

chr17:-:1773114..1775156

Molecular Weight (calculated)

21517.7 Da

IEP (calculated)

11.676

GRAVY (calculated)

-0.949

Length

183 amino acids

Sequence
(BLAST)

001: MASMKLQKRL AACLLHCGQG KVWLDPNEIS NISLANSRTD IRKLVKDGFV IKKPSKTHSR GRARRSLEGK AKGRHSGEGK RKGTREARLP SKVVWMRKLR
101: VLRRLLRKYR ELEKIDRHVY HEMYMKAKGN TFKNKRALME TIHKLKAERA REKVISHQFE TKRKAAMHHR RWSVNNNECK LCP

Best Arabidopsis Sequence Match ( AT3G16780.1 )
(BLAST)

001: MVSLKIQKRL AASVMKCGKG KVWLDPNESG DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARALNEAK RKGRHSGYGK RKGTREARLP TKILWMRRMR
101: VLRRFLSKYR ESKKIDRHMY HDMYMKVKGN VFKNKRVLME SIHKMKAEKA REKTLADQFE AKRIKNKASR ERKFARREER LAQGPGGGET TTPAGAPQQP
201: EVTKKKSKK

Arabidopsis Description

RPL19B60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.