Factsheet for VIT_13s0067g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
peroxisome 1
golgi 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03370.t01
VIT_01s0010g03380.t01
VIT_01s0010g03800.t01
VIT_01s0011g00680.t01
VIT_01s0026g02110.t01
VIT_01s0150g00580.t01
VIT_03s0063g00130.t01
VIT_04s0008g02720.t01
VIT_04s0008g06220.t01
VIT_04s0023g03210.t01
VIT_05s0020g02990.t01
VIT_05s0077g01840.t01
VIT_06s0004g07940.t01
VIT_06s0004g08260.t01
VIT_07s0005g00840.t01
VIT_07s0151g00900.t01
VIT_08s0007g06790.t01
VIT_08s0007g08370.t01
VIT_10s0003g01830.t01
VIT_11s0016g02520.t01
VIT_11s0118g00680.t01
VIT_12s0057g01310.t01
VIT_13s0064g00520.t01
VIT_13s0067g02700.t01
VIT_14s0030g01620.t01
VIT_14s0083g00970.t01
VIT_14s0108g00460.t01
VIT_15s0048g00220.t01
VIT_15s0048g00670.t01
VIT_16s0022g01590.t01
VIT_17s0000g01520.t01
VIT_17s0000g05970.t01
VIT_17s0000g06980.t01
VIT_18s0001g05140.t01
VIT_18s0001g14500.t01
VIT_18s0001g14620.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05760.1	VIT_05s0077g01840.t01	AT1G02780.1	24556609
AT5G05760.1	VIT_07s0005g00840.t01	AT1G02780.1	24556609
AT5G05760.1	VIT_01s0150g00580.t01	AT1G14320.1	24556609
AT5G05760.1	VIT_06s0004g08260.t01	AT1G14320.1	24556609
AT5G05760.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT5G05760.1	VIT_01s0010g03370.t01	AT1G27400.1	24556609
AT5G05760.1	VIT_01s0010g03380.t01	AT1G27400.1	24556609
AT5G05760.1	VIT_17s0000g01520.t01	AT1G27400.1	24556609
AT5G05760.1	VIT_18s0001g05140.t01	AT1G27400.1	24556609
AT5G05760.1	VIT_13s0064g00520.t01	AT1G66280.1	24556609
AT5G05760.1	VIT_12s0057g01310.t01	AT2G04280.1	24556609
AT5G05760.1	VIT_04s0023g03210.t01	AT2G18020.1	24556609
AT5G05760.1	VIT_06s0004g07940.t01	AT2G40510.1	24556609
AT5G05760.1	VIT_13s0067g02700.t01	AT2G40510.1	24556609
AT5G05760.1	VIT_01s0011g00680.t01	AT3G02080.1	24556609
AT5G05760.1	VIT_17s0000g06980.t01	AT3G02080.1	24556609
AT5G05760.1	VIT_07s0151g00900.t01	AT3G04920.1	24556609
AT5G05760.1	VIT_14s0030g01620.t01	AT3G04920.1	24556609
AT5G05760.1	VIT_08s0007g06790.t01	AT3G12030.1	24556609
AT5G05760.1	VIT_04s0008g06220.t01	AT3G48930.1	24556609
AT5G05760.1	VIT_11s0118g00680.t01	AT3G48930.1	24556609
AT5G05760.1	VIT_08s0007g08370.t01	AT3G57490.1	24556609
AT5G05760.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT5G05760.1	VIT_15s0048g00670.t01	AT3G60770.1	24556609
AT5G05760.1	VIT_16s0022g01590.t01	AT3G60770.1	24556609
AT5G05760.1	VIT_14s0083g00970.t01	AT3G62870.1	24556609
AT5G05760.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT5G05760.1	VIT_18s0001g14500.t01	AT4G24190.1	24556609
AT5G05760.1	VIT_11s0016g02520.t01	AT4G29520.1	24556609
AT5G05760.1	VIT_04s0008g02720.t01	AT4G31340.1	24556609
AT5G05760.1	VIT_01s0026g02110.t01	AT5G15200.1	24556609
AT5G05760.1	VIT_14s0108g00460.t01	AT5G15200.1	24556609
AT5G05760.1	VIT_17s0000g05970.t01	AT5G15200.1	24556609
AT5G05760.1	VIT_03s0063g00130.t01	AT5G18380.1	24556609
AT5G05760.1	VIT_05s0020g02990.t01	AT5G18380.1	24556609
AT5G05760.1	VIT_18s0001g14620.t01	AT5G18380.1	24556609
AT5G05760.1	VIT_07s0151g00900.t01	AT5G28060.1	24556609
AT5G05760.1	VIT_14s0030g01620.t01	AT5G28060.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73168	Soybean	cytosol	62.28	73.43
KRH15025	Soybean	cytosol	60.0	71.17
CDX70131	Canola	cytosol	11.14	68.75
CDY14956	Canola	cytosol	18.48	65.77
KRH14969	Soybean	cytosol	40.25	65.7
PGSC0003DMT400047329	Potato	cytosol, plastid	54.18	63.88
Bra005866.1-P	Field mustard	cytosol, plastid	54.18	62.94
CDY11339	Canola	cytosol, plastid	54.18	62.94
AT5G05760.1	Thale cress	cytosol	53.42	62.8
CDX80972	Canola	plastid	54.18	62.76
Solyc07g054140.2.1	Tomato	cytosol, plastid	50.38	62.58
VIT_11s0016g04370.t01	Wine grape	plastid	45.32	52.96
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	44.81	52.06

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100244928	wikigene:100244928	MapMan:22.7.1.3	ProteinID:CBI25507	ProteinID:CBI25507.3
UniProt:D7T4S5	EMBL:FN595514	GO:GO:0000139	GO:GO:0000149	GO:GO:0003674	GO:GO:0003824
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888
GO:GO:0006906	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0031201
GO:GO:0034968	GO:GO:0048278	InterPro:IPR000727	EntrezGene:LOC100244928	wikigene:LOC100244928	PFAM:PF05739
PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF117	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI0001BE2413	ArrayExpress:VIT_13s0067g00280	EnsemblPlantsGene:VIT_13s0067g00280	EnsemblPlants:VIT_13s0067g00280.t01	RefSeq:XP_002268768	RefSeq:XP_002268768.2
RefSeq:XP_002268768.3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:195175..213581

Molecular Weight (calculated)

43977.8 Da

IEP (calculated)

9.050

GRAVY (calculated)

-0.187

Length

395 amino acids

Sequence
(BLAST)

001: MAAVSMGHHG PTMPIFHGLW PARRFFAWSR FLFVIDVYIS PPPVTVTDYP LQFPMTSSGV SSYRDRTSEF RSLSGRMKKI GGMAVANHAE DDPATSRSLA
101: SASSRSEFNK KASRIGLGIH EACLKISRLA KLAKKSSMFN DPIMEIQELT ALIKDDITAL NIAVSDLQTL QNLEIADGNY SDDRVVHSNT VCDDLKNKLM
201: GATKQLQDVL TTRTENIKAH ENRKQIFSTN VSRENPFQQH AKTVTEPPPW SSLSKTSGNL QPSVLSSNGV QVGNQLRRRL AVDNTPSNHM EVSMLQQVVP
301: RQENYTQSRA LALQNVESTI SELSGIFTHL ATMVAQQGEL AIRIDDNMDE SLANVEGAQS ALLKHLNQIS SNRWLLLKIF AILIFFLMIF IFFVV

Best Arabidopsis Sequence Match ( AT5G05760.1 )
(BLAST)

001: MGSTFRDRTV ELHSLSQTLK KIGAIPSVHQ DEDDPASSKR SSPGSEFNKK ASRIGLGIKE TSQKITRLAK LAKQSTIFND RTVEIQELTV LIRNDITGLN
101: MALSDLQTLQ NMELADGNYS QDQVGHYTAV CDDLKTRLMG ATKQLQDVLT TRSENMKAHE NRKQLFSTKN AVDSPPQNNA KSVPEPPPWS SSSNPFGNLQ
201: QPLLPPLNTG APPGSQLRRR SAIENAPSQQ MEMSLLQQTV PKQENYSQSR AVALHSVESR ITELSGIFPQ LATMVTQQGE LAIRIDDNMD ESLVNVEGAR
301: SALLQHLTRI SSNRWLMMKI FAVIILFLIV FLFFVA

Arabidopsis Description

SYP31Syntaxin-31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFK1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.