Factsheet for VIT_04s0008g04350.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
endoplasmic reticulum 1
cytosol 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61871	Soybean	endoplasmic reticulum	83.82	84.57
KRH52535	Soybean	cytosol, plastid	83.53	84.52
Solyc08g067910.2.1	Tomato	plastid	83.53	83.28
KRH52536	Soybean	endoplasmic reticulum	82.06	82.3
KRH61874	Soybean	endoplasmic reticulum	82.06	82.3
PGSC0003DMT400037606	Potato	cytosol, plastid	82.06	82.06
VIT_11s0016g04370.t01	Wine grape	plastid	80.59	81.07
PGSC0003DMT400011584	Potato	cytosol, plastid	79.12	76.42
GSMUA_Achr10P...	Banana	cytosol	69.41	68.8
GSMUA_Achr7P08550_001	Banana	cytosol	69.12	68.71
GSMUA_Achr6P04790_001	Banana	cytosol	67.06	66.86
Zm00001d039614_P001	Maize	plasma membrane	64.71	64.14
Os01t0179200-01	Rice	plasma membrane	64.71	63.95
EES02357	Sorghum	plastid	63.82	63.82
Zm00001d008758_P001	Maize	plasma membrane	64.12	63.37
HORVU3Hr1G022030.2	Barley	plastid	63.24	62.87
TraesCS3B01G138100.1	Wheat	plastid	63.24	62.87
TraesCS3A01G119100.1	Wheat	plastid	62.94	62.39
TraesCS3D01G121000.2	Wheat	plastid	62.94	62.39
VIT_13s0067g00280.t01	Wine grape	plastid	52.06	44.81

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100257761	wikigene:100257761	MapMan:22.7.1.3	ProteinID:CBI20938	ProteinID:CBI20938.3
UniProt:D7SUI9	EMBL:FN595231	GO:GO:0000139	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0006888	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727	EntrezGene:LOC100257761	wikigene:LOC100257761	PFAM:PF05739
PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TIGR:TC55309	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0001982FDD	ArrayExpress:VIT_04s0008g04350	EnsemblPlantsGene:VIT_04s0008g04350	EnsemblPlants:VIT_04s0008g04350.t01	unigene:Vvi.9376
RefSeq:XP_002284618	RefSeq:XP_002284618.1	RefSeq:XP_010648564.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:3752658..3757450

Molecular Weight (calculated)

38121.2 Da

IEP (calculated)

9.919

GRAVY (calculated)

-0.427

Length

340 amino acids

Sequence
(BLAST)

001: MPVKLQQSSF RDRTPEFLNV AERLKKSFSS TQNGANSASK AEEQRFAVAM QSEFNKRASK IGFGIHQTSQ KLSKLAKLAK RTSVFDDPTM EIQELTAVIK
101: QDITALNSAV VDLQLLSNSR NESGNISSDT TSHSTTVVDD LKNRLMSATK EFKEVLTMRT ENLKVHENRR QLFSTASKDS TNPFVRQRPL ATRSAASASA
201: SPPPWANGSP SSSQLFPRKQ IDGESQPLIQ QQQQQQQQQQ QQLVPLQDSY MQSRAEALQN VESTIHELSS IFNQLATLVS QQGELAIRID ENMDDTLANV
301: EGAQGALLKY LHSISSNRWL MIKIFFVLIF FLMVFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.