Factsheet for GSMUA_Achr6P04790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plasma membrane 1
cytosol 2
golgi 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P08550_001	Banana	cytosol	82.11	81.87
GSMUA_Achr10P...	Banana	cytosol	80.35	79.88
Os01t0179200-01	Rice	plasma membrane	74.19	73.55
Zm00001d008758_P001	Maize	plasma membrane	72.73	72.09
EES02357	Sorghum	plastid	71.85	72.06
Zm00001d039614_P001	Maize	plasma membrane	72.14	71.72
TraesCS3D01G121000.2	Wheat	plastid	72.14	71.72
HORVU3Hr1G022030.2	Barley	plastid	71.85	71.64
TraesCS3A01G119100.1	Wheat	plastid	71.85	71.43
TraesCS3B01G138100.1	Wheat	plastid	71.55	71.34
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	66.86	67.06
KRH52536	Soybean	endoplasmic reticulum	66.57	66.96
VIT_11s0016g04370.t01	Wine grape	plastid	66.28	66.86
KRH61871	Soybean	endoplasmic reticulum	65.98	66.77
KRH52535	Soybean	cytosol, plastid	65.69	66.67
KRH61874	Soybean	endoplasmic reticulum	65.98	66.37
Solyc08g067910.2.1	Tomato	plastid	65.1	65.1
PGSC0003DMT400037606	Potato	cytosol, plastid	63.93	64.12
PGSC0003DMT400011584	Potato	cytosol, plastid	63.05	61.08
CDX94818	Canola	cytosol	58.65	59.35
Bra015036.1-P	Field mustard	cytosol	58.65	58.14
CDX77428	Canola	cytosol	58.36	57.85
Bra028370.1-P	Field mustard	cytosol	49.85	57.24
CDY47175	Canola	cytosol	57.18	57.02
CDY67342	Canola	cytosol	56.89	56.89
CDX93010	Canola	cytosol	58.36	56.37
AT3G24350.2	Thale cress	cytosol	58.94	55.68
CDY66440	Canola	cytosol	58.36	55.59
Bra001945.1-P	Field mustard	cytosol	58.94	54.77

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSMUA_Achr6G04790_001	EnsemblPlants:GSMUA_Achr6P04790_001	EnsemblPlants:GSMUA_Achr6T04790_001	InterPro:IPR000727	UniProt:M0T477
PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206
SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI0002969756	SEG:seg	:	:	:

Description

Syntaxin-32 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04790_001]

Coordinates

chr6:+:3249126..3252003

Molecular Weight (calculated)

37737.8 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.344

Length

341 amino acids

Sequence
(BLAST)

001: MNSRPGQASY RDRTQEFVKA VENLKTPFSL VADASNSSTG SILEGPKSTA SNQSGFNRKA SKIGLGIHQT SQKLAKLAKL AKRTSVFDDP AVEIQELTAV
101: IKQDITALNS AVVDLQLLCN SQNESGTMSK DTTSHSATVV DNLKNRLMSA TKEFKEVLTM RTENFKVHEN RRQLFSSSAA KDVTNPFLRQ RPLSSRGISD
201: SNAPSAPWEN GSTHSSSLFP RRMMNGEPSS SIQPLIQQQQ QQQTAPVQDH YIQSRAEALQ NVESTIHELS NIFTQLATMV SQQGELAIRI DENVDDTLAN
301: VEGAQGALLK YLTSISSNRW LMMKIFFVLM VFLMIFLFFV A

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.