Factsheet for Bra001945.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93010	Canola	cytosol	90.46	94.05
Bra015036.1-P	Field mustard	cytosol	85.29	90.99
Bra028370.1-P	Field mustard	cytosol	69.21	85.52
AT3G24350.2	Thale cress	cytosol	75.48	76.73
VIT_11s0016g04370.t01	Wine grape	plastid	64.85	70.41
KRH61871	Soybean	endoplasmic reticulum	63.22	68.84
KRH52536	Soybean	endoplasmic reticulum	63.49	68.73
KRH61874	Soybean	endoplasmic reticulum	63.22	68.44
KRH52535	Soybean	cytosol, plastid	61.85	67.56
Solyc08g067910.2.1	Tomato	plastid	61.31	65.98
PGSC0003DMT400037606	Potato	cytosol, plastid	60.49	65.29
GSMUA_Achr10P...	Banana	cytosol	58.31	62.39
PGSC0003DMT400011584	Potato	cytosol, plastid	57.77	60.23
GSMUA_Achr7P08550_001	Banana	cytosol	55.86	59.94
GSMUA_Achr6P04790_001	Banana	cytosol	54.77	58.94
Os01t0179200-01	Rice	plasma membrane	53.68	57.27
HORVU3Hr1G022030.2	Barley	plastid	53.13	57.02
TraesCS3B01G138100.1	Wheat	plastid	53.13	57.02
TraesCS3A01G119100.1	Wheat	plastid	53.13	56.85
TraesCS3D01G121000.2	Wheat	plastid	52.86	56.56
EES02357	Sorghum	plastid	51.77	55.88
Zm00001d039614_P001	Maize	plasma membrane	52.04	55.69
Zm00001d008758_P001	Maize	plasma membrane	52.04	55.52
Bra005866.1-P	Field mustard	cytosol, plastid	43.05	46.47

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.3	ProteinID:AAK94422	ProteinID:AAK94422.1	ProteinID:AAK94423	ProteinID:AAK94423.1
EMBL:AF398141	EMBL:AF398142	EnsemblPlantsGene:Bra001945	EnsemblPlants:Bra001945.1	EnsemblPlants:Bra001945.1-P	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4CCL5	PFAM:PF05739
PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00025407C2	SEG:seg	:	:	:	:

Description

AT3G24350 (E=4e-108) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor

Coordinates

chrA03:+:19509749..19511820

Molecular Weight (calculated)

41405.1 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.445

Length

367 amino acids

Sequence
(BLAST)

001: MQARHGHSSY RDRTNEFFGV VETLRRSIAP AANNVPYGGG RREDPRSAAV MQSEFNRRAS VIGLAIHQTS QKLSKLAQLE MEEAVVFLAY TLSIEFNQLC
101: HLVAKSVAKR SSVFDDPTRE IGELTAVIKQ EISGLNTALI DLQAVRNSHN DERNISRDTT THSATVVDDL KNRLMDTTKE FKDVLTLRTE NMKIHENRRQ
201: RFTNNPSKES TNPFVRQRPL ASKPAPSQPA PLPWANSSSS SSSQLVPRRQ GEAESSPLLQ QSQQQQQQQM VPLQDTYMES RAEALHNVES TIHELSNIFT
301: QLATMVSQQG EIAIRIDQNM EDTLANVEGA QSQLARYLNS ISSNRWLMIK IFFVLIAFLM VFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.2 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KRIRMVLRSR TDLFSVAKRT
101: SVFDDPTQEI QELTVVIKQE ISALNSALVD LQLFRSSQND EGNNSRDRDK STHSATVVDD LKYRLMDTTK EFKDVLTMRT ENMKVHESRR QLFSSNASKE
201: STNPFVRQRP LAAKAAASES VPLPWANGSS SSSSQLVPWK PGEGESSPLL QQSQQQQQQQ QQQMVPLQDT YMQGRAEALH TVESTIHELS SIFTQLATMV
301: SQQGEIAIRI DQNMEDTLAN VEGAQSQLAR YLNSISSNRW LMMKIFFVLI AFLMIFLFFV A

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.