Factsheet for Zm00001d039614_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008758_P001	Maize	plasma membrane	94.17	93.9
EES02357	Sorghum	plastid	92.71	93.53
HORVU3Hr1G022030.2	Barley	plastid	86.01	86.26
TraesCS3A01G119100.1	Wheat	plastid	86.01	86.01
TraesCS3B01G138100.1	Wheat	plastid	85.71	85.96
Os01t0179200-01	Rice	plasma membrane	86.01	85.76
TraesCS3D01G121000.2	Wheat	plastid	85.42	85.42
GSMUA_Achr7P08550_001	Banana	cytosol	74.05	74.27
GSMUA_Achr10P...	Banana	cytosol	73.47	73.47
GSMUA_Achr6P04790_001	Banana	cytosol	71.72	72.14
VIT_11s0016g04370.t01	Wine grape	plastid	65.31	66.27
KRH52536	Soybean	endoplasmic reticulum	64.14	64.9
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	64.14	64.71
KRH61871	Soybean	endoplasmic reticulum	63.56	64.69
KRH52535	Soybean	cytosol, plastid	62.97	64.29
KRH61874	Soybean	endoplasmic reticulum	63.27	64.01
Solyc08g067910.2.1	Tomato	plastid	63.27	63.64
PGSC0003DMT400037606	Potato	cytosol, plastid	62.68	63.24
PGSC0003DMT400011584	Potato	cytosol, plastid	61.81	60.23
CDX94818	Canola	cytosol	55.39	56.38
Bra015036.1-P	Field mustard	cytosol	55.39	55.23
CDX77428	Canola	cytosol	55.1	54.94
CDX93010	Canola	cytosol	55.69	54.11
AT3G24350.2	Thale cress	cytosol	56.85	54.02
CDY47175	Canola	cytosol	53.64	53.8
CDY67342	Canola	cytosol	52.77	53.08
CDY66440	Canola	cytosol	55.39	53.07
Bra028370.1-P	Field mustard	cytosol	45.77	52.86
Bra001945.1-P	Field mustard	cytosol	55.69	52.04

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100192511	MapMan:22.7.1.3	UniProt:B4FBM0	EMBL:BT034508	EMBL:BT040626
EMBL:BT055053	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
InterPro:IPR000727	ProteinID:ONM29494.1	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin-5_N
InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00017B63E8	EnsemblPlantsGene:Zm00001d039614	EnsemblPlants:Zm00001d039614_P001
EnsemblPlants:Zm00001d039614_T001	SEG:seg	:	:	:	:

Description

Syntaxin-32

Coordinates

chr3:-:9087885..9092751

Molecular Weight (calculated)

37771.7 Da

IEP (calculated)

9.987

GRAVY (calculated)

-0.359

Length

343 amino acids

Sequence
(BLAST)

001: MIPTRSAQAS FRDRTNEFRA AVERARRHAV PSSSSAPAAP SSSSTGPLDG LIAATSARSE FNNRASKIGL GIHQTSQKLS RLAKLAKRTS VFDDPTVEIQ
101: ELTAVIKKDI TALNSAVVDL QALCNSQNES GSLSKDTSNH STTVVDNLKN RLMSATKEFK EVLTMRTENL KVHENRRQMF SSSAAKDASN PFIRQRPLVA
201: RDPSESSVPP APWASDSAST PLFQRKKTNG DHGASSSQPF AQQQQLAVQQ DSYMQSRAEA LQNVESTIHE LSNIFTQLAT MVSQQGELAI RIDENMEETV
301: ANVEGAQGQL LKYLNSISSN RWLMMKIFFV LMVFLMIFIF FVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.