CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
nucleus 1
cytosol 2
golgi 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52535	Soybean	cytosol, plastid	96.14	96.43
KRH52536	Soybean	endoplasmic reticulum	91.69	91.15
KRH61874	Soybean	endoplasmic reticulum	91.1	90.56
VIT_04s0008g04350.t01	Wine grape	cytosol, plastid	84.57	83.82
Solyc08g067910.2.1	Tomato	plastid	81.01	80.06
PGSC0003DMT400037606	Potato	cytosol, plastid	80.12	79.41
PGSC0003DMT400011584	Potato	cytosol, plastid	77.74	74.43
CDX94818	Canola	cytosol	68.55	68.55
GSMUA_Achr7P08550_001	Banana	cytosol	68.84	67.84
GSMUA_Achr10P...	Banana	cytosol	68.84	67.64
Bra015036.1-P	Field mustard	cytosol	68.84	67.44
CDY67342	Canola	cytosol	67.95	67.16
CDY47175	Canola	cytosol	67.95	66.96
CDX77428	Canola	cytosol	68.25	66.86
CDX93010	Canola	cytosol	69.14	66.01
GSMUA_Achr6P04790_001	Banana	cytosol	66.77	65.98
AT3G24350.2	Thale cress	cytosol	69.44	64.82
CDY66440	Canola	cytosol	68.84	64.8
Os01t0179200-01	Rice	plasma membrane	65.58	64.24
Zm00001d008758_P001	Maize	plasma membrane	64.99	63.66
Zm00001d039614_P001	Maize	plasma membrane	64.69	63.56
EES02357	Sorghum	plastid	63.8	63.24
Bra001945.1-P	Field mustard	cytosol	68.84	63.22
TraesCS3A01G119100.1	Wheat	plastid	64.09	62.97
TraesCS3B01G138100.1	Wheat	plastid	63.8	62.87
HORVU3Hr1G022030.2	Barley	plastid	63.8	62.87
TraesCS3D01G121000.2	Wheat	plastid	63.5	62.39
Bra028370.1-P	Field mustard	cytosol	54.6	61.95
KRH14969	Soybean	cytosol	37.69	52.48
KRH15025	Soybean	cytosol	51.34	51.95
KRH73168	Soybean	cytosol	51.04	51.34

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100777961	MapMan:22.7.1.3	EMBL:ACUP02002196	EnsemblPlantsGene:GLYMA_04G072700	GO:GO:0000139
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0006888	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	UniProt:I1JUJ6	InterPro:IPR000727
EnsemblPlants:KRH61871	ProteinID:KRH61871	ProteinID:KRH61871.1	PFAM:PF05739	PFAM:PF11416	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF206	SMART:SM00397	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin-5_N	InterPro:Syntaxin/epimorphin_CS	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001BA8561	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:6065030..6068551

Molecular Weight (calculated)

37514.3 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.474

Length

337 amino acids

Sequence
(BLAST)

001: MYTKSAQSSF RDRTHEFQSI AERLKKTGSA PNGQSSSSSR SEEQRSAIAN QSEFNRRASK IGLGIHQTSQ KLAKLAKLAK RTSVFDDPTM EIQELTGVIK
101: QDITALNSAV VDLQLLCNSR NESGNASTDT TSHSTTVVDD LKTRLMSTTK EFKDVLTMRT ENLKVHENRR QLFSANGSKD SANPFVRQRP LATRSAANTS
201: NAPAPPWATG SSSSQLFPKK QVDGESQPLL QQQQQQQQEV VPLQDSYMQS RAEALQNVES TIHELSNIFN QLATLVSQQG EIAIRIDENM DDTLANVEGA
301: QGALLKYLNS ISSNRWLMIK IFFVLIFFLM VFLFFVA

Best Arabidopsis Sequence Match ( AT3G24350.1 )
(BLAST)

001: MSARHGQSSY RDRSDEFFKI VETLRRSIAP APAANNVPYG NNRNDGARRE DLINKSEFNK RASHIGLAIN QTSQKLSKLA KLAKRTSVFD DPTQEIQELT
101: VVIKQEISAL NSALVDLQLF RSSQNDEGNN SRDRDKSTHS ATVVDDLKYR LMDTTKEFKD VLTMRTENMK VHESRRQLFS SNASKESTNP FVRQRPLAAK
201: AAASESVPLP WANGSSSSSS QLVPWKPGEG ESSPLLQQSQ QQQQQQQQQM VPLQDTYMQG RAEALHTVES TIHELSSIFT QLATMVSQQG EIAIRIDQNM
301: EDTLANVEGA QSQLARYLNS ISSNRWLMMK IFFVLIAFLM IFLFFVA

Arabidopsis Description

SYP32Syntaxin of plants 32 [Source:UniProtKB/TrEMBL;Acc:F4J6K6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.